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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    868201 8syi:Z (2.94) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    868202 8syl:1 (2.9) BS01 rna ? GO:0000027 ... P0A7M6 37537169
    868203 8syl:2 (2.9) BS01 rna ? GO:0000027 ... P0AG51 37537169
    868204 8syl:2 (2.9) BS02 rna ? GO:0000027 ... P0AG51 37537169
    868205 8syl:3 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 37537169
    868206 8syl:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 37537169
    868207 8syl:4 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 37537169
    868208 8syl:5 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 37537169
    868209 8syl:6 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 37537169
    868210 8syl:7 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 37537169
    868211 8syl:8 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 37537169
    868212 8syl:8 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 37537169
    868213 8syl:C (2.9) BS01 rna ? GO:0000027 ... P60422 37537169
    868214 8syl:C (2.9) BS02 rna ? GO:0000027 ... P60422 37537169
    868215 8syl:C (2.9) BS03 MG ? GO:0000027 ... P60422 37537169
    868216 8syl:D (2.9) BS01 rna ? GO:0000027 ... P60438 37537169
    868217 8syl:E (2.9) BS01 rna ? GO:0001070 ... P60723 37537169
    868218 8syl:F (2.9) BS01 rna ? GO:0000027 ... P62399 37537169
    868219 8syl:F (2.9) BS02 rna ? GO:0000027 ... P62399 37537169
    868220 8syl:F (2.9) BS03 rna ? GO:0000027 ... P62399 37537169
    868221 8syl:G (2.9) BS01 rna ? GO:0000027 ... P0AG55 37537169
    868222 8syl:H (2.9) BS01 rna ? GO:0002181 ... P0A7R1 37537169
    868223 8syl:L (2.9) BS01 rna ? GO:0002181 ... P0AA10 37537169
    868224 8syl:M (2.9) BS01 rna ? GO:0002181 ... P0ADY3 37537169
    868225 8syl:M (2.9) BS02 rna ? GO:0002181 ... P0ADY3 37537169
    868226 8syl:N (2.9) BS01 rna ? GO:0002181 ... P02413 37537169
    868227 8syl:O (2.9) BS01 rna ? GO:0000027 ... P0ADY7 37537169
    868228 8syl:O (2.9) BS02 rna ? GO:0000027 ... P0ADY7 37537169
    868229 8syl:O (2.9) BS03 rna ? GO:0000027 ... P0ADY7 37537169
    868230 8syl:P (2.9) BS01 rna ? GO:0000027 ... P0AG44 37537169
    868231 8syl:Q (2.9) BS01 rna ? GO:0002181 ... P0C018 37537169
    868232 8syl:Q (2.9) BS02 rna ? GO:0002181 ... P0C018 37537169
    868233 8syl:R (2.9) BS01 rna ? GO:0000027 ... P0A7K6 37537169
    868234 8syl:R (2.9) BS02 rna ? GO:0000027 ... P0A7K6 37537169
    868235 8syl:S (2.9) BS01 rna ? GO:0000027 ... P0A7L3 37537169
    868236 8syl:T (2.9) BS01 rna ? GO:0002181 ... P0AG48 37537169
    868237 8syl:U (2.9) BS01 rna ? GO:0002181 ... P61175 37537169
    868238 8syl:V (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 37537169
    868239 8syl:W (2.9) BS01 rna ? GO:0000027 ... P60624 37537169
    868240 8syl:X (2.9) BS01 rna ? GO:0000027 ... P68919 37537169
    868241 8syl:Y (2.9) BS01 rna ? GO:0000027 ... P0A7L8 37537169
    868242 8syl:Y (2.9) BS02 rna ? GO:0000027 ... P0A7L8 37537169
    868243 8syl:Y (2.9) BS03 rna ? GO:0000027 ... P0A7L8 37537169
    868244 8syl:Z (2.9) BS01 rna ? GO:0000027 ... P0A7M2 37537169
    868245 8syl:b (2.9) BS01 rna ? GO:0000028 ... P0A7V0 37537169
    868246 8syl:c (2.9) BS01 rna ? GO:0000028 ... P0A7V3 37537169
    868247 8syl:d (2.9) BS01 rna ? GO:0000028 ... P0A7V8 37537169
    868248 8syl:e (2.9) BS01 rna ? GO:0000028 ... P0A7W1 37537169
    868249 8syl:f (2.9) BS01 rna ? GO:0002181 ... P02358 37537169
    868250 8syl:g (2.9) BS01 rna ? GO:0003723 ... P02359 37537169
    868251 8syl:g (2.9) BS02 rna ? GO:0003723 ... P02359 37537169
    868252 8syl:h (2.9) BS01 rna ? GO:0000028 ... P0A7W7 37537169
    868253 8syl:i (2.9) BS01 rna ? GO:0000049 ... P0A7X3 37537169
    868254 8syl:i (2.9) BS02 rna ? GO:0000049 ... P0A7X3 37537169
    868255 8syl:j (2.9) BS01 rna ? GO:0000049 ... P0A7R5 37537169
    868256 8syl:k (2.9) BS01 rna ? GO:0002181 ... P0A7R9 37537169
    868257 8syl:l (2.9) BS01 rna ? GO:0000049 ... P0A7S3 37537169
    868258 8syl:l (2.9) BS02 rna ? GO:0000049 ... P0A7S3 37537169
    868259 8syl:m (2.9) BS01 rna ? GO:0000049 ... P0A7S9 37537169
    868260 8syl:m (2.9) BS02 rna ? GO:0000049 ... P0A7S9 37537169
    868261 8syl:n (2.9) BS01 rna ? GO:0000028 ... P0AG59 37537169
    868262 8syl:o (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 37537169
    868263 8syl:o (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 37537169
    868264 8syl:p (2.9) BS01 rna ? GO:0000028 ... P0A7T3 37537169
    868265 8syl:q (2.9) BS01 rna ? GO:0000028 ... P0AG63 37537169
    868266 8syl:r (2.9) BS01 rna ? GO:0002181 ... P0A7T7 37537169
    868267 8syl:s (2.9) BS01 rna ? GO:0000028 ... P0A7U3 37537169
    868268 8syl:t (2.9) BS01 rna ? GO:0000028 ... P0A7U7 37537169
    868269 8syl:u (2.9) BS01 rna ? GO:0000028 ... P68679 37537169
    868270 8syp:A (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    868271 8syp:A (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    868272 8syp:B (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    868273 8syp:B (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    868274 8syp:C (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    868275 8syp:C (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    868276 8syp:D (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    868277 8syp:D (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    868278 8syp:E (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    868279 8syp:E (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    868280 8syp:F (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    868281 8syp:F (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    868282 8syp:G (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    868283 8syp:G (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    868284 8syp:H (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    868285 8syp:H (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    868286 8sz2:A (2.01) BS01 peptide 3.2.2.22 N/A P09385 N/A
    868287 8sz2:B (2.01) BS01 peptide 3.2.2.22 N/A P09385 N/A
    868288 8sz3:A (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    868289 8sz3:B (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    868290 8sz6:A (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    868291 8sz6:B (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    868292 8sz6:B (1.65) BS02 XII 1.1.1.88 GO:0004420 ... P13702 38327055
    868293 8sz6:B (1.65) BS03 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    868294 8sz6:B (1.65) BS04 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    868295 8sz8:b (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    868296 8sz8:b (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    868297 8sz8:c (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    868298 8sz8:c (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    868299 8sz8:f (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    868300 8sz8:f (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    868301 8sz8:g (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    868302 8sz8:g (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    868303 8sza:A (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    868304 8sza:B (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    868305 8sza:C (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    868306 8sza:D (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    868307 8sza:E (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    868308 8sza:F (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    868309 8szc:C (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    868310 8szc:C (3.06) BS02 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    868311 8szc:D (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    868312 8szd:A (1.25) BS01 MG 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    868313 8sze:A (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    868314 8sze:B (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    868315 8szf:A (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    868316 8szf:A (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    868317 8szf:A (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    868318 8szf:B (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    868319 8szf:B (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    868320 8szf:B (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    868321 8szg:A (3.6) BS01 YP4 ? GO:0004930 ... P41180 38326620
    868322 8szg:A (3.6) BS02 CA ? GO:0004930 ... P41180 38326620
    868323 8szg:A (3.6) BS03 TRP ? GO:0004930 ... P41180 38326620
    868324 8szg:B (3.6) BS01 CLR ? GO:0004930 ... P41180 38326620
    868325 8szg:B (3.6) BS02 TRP ? GO:0004930 ... P41180 38326620
    868326 8szg:B (3.6) BS03 YP4 ? GO:0004930 ... P41180 38326620
    868327 8szh:A (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    868328 8szh:A (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    868329 8szh:A (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    868330 8szh:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    868331 8szh:B (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    868332 8szh:B (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    868333 8szi:A (3.5) BS01 CA ? GO:0004930 ... P41180 38326620
    868334 8szi:A (3.5) BS02 TRP ? GO:0004930 ... P41180 38326620
    868335 8szi:A (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    868336 8szi:B (3.5) BS01 CLR ? GO:0004930 ... P41180 38326620
    868337 8szi:B (3.5) BS02 CA ? GO:0004930 ... P41180 38326620
    868338 8szi:B (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    868339 8szj:A (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868340 8szj:B (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868341 8szj:C (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868342 8szj:D (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868343 8szj:E (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868344 8szj:F (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868345 8szj:G (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868346 8szj:H (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868347 8szj:I (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868348 8szj:J (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868349 8szj:K (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868350 8szj:L (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    868351 8szm:A (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    868352 8szm:G (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    868353 8szm:X (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    868354 8szm:Y (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    868355 8szm:Z (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    868356 8szm:a (2.35) BS01 X3O N/A N/A C3TLT2 39221504
    868357 8szn:H (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868358 8szn:I (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868359 8szn:J (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868360 8szn:K (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868361 8szn:L (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868362 8szn:L (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868363 8szn:M (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868364 8szn:M (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868365 8szn:N (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868366 8szn:N (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868367 8szn:V (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868368 8szn:V (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868369 8szn:W (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868370 8szn:W (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868371 8szn:X (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868372 8szn:Y (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868373 8szn:Z (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868374 8szn:Z (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868375 8szn:a (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868376 8szn:a (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868377 8szn:b (2.33) BS01 X3O N/A N/A Q9JZ38 39221504
    868378 8szn:b (2.33) BS02 X3O N/A N/A Q9JZ38 39221504
    868379 8szo:A (2.5) BS01 MN N/A GO:0030246 ... N/A 28693997
    868380 8szo:A (2.5) BS02 CA N/A GO:0030246 ... N/A 28693997
    868381 8szo:A (2.5) BS03 MMA N/A GO:0030246 ... N/A 28693997
    868382 8szp:A (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    868383 8szp:A (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    868384 8szp:B (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    868385 8szp:B (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    868386 8szq:A (2.711) BS01 ADP 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    868387 8szq:A (2.711) BS02 MG 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    868388 8szr:A (2.97) BS01 ADP 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    868389 8szr:A (2.97) BS02 MG 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    868390 8szs:A (2.38) BS01 GDP 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    868391 8szs:A (2.38) BS02 MG 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    868392 8szt:A (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    868393 8szt:B (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    868394 8szt:C (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    868395 8szt:D (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    868396 8szu:A (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    868397 8szu:A (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    868398 8szu:A (1.75) BS03 ZN ? GO:0000122 ... R8YPJ7 37624144
    868399 8szu:A (1.75) BS04 X4U ? GO:0000122 ... R8YPJ7 37624144
    868400 8szu:B (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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