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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    867601 8sst:A (2.19) BS02 dna ? N/A P49711 37439339
    867602 8sst:A (2.19) BS03 ZN ? N/A P49711 37439339
    867603 8sst:A (2.19) BS04 ZN ? N/A P49711 37439339
    867604 8sst:A (2.19) BS05 ZN ? N/A P49711 37439339
    867605 8sst:A (2.19) BS06 ZN ? N/A P49711 37439339
    867606 8sst:A (2.19) BS07 ZN ? N/A P49711 37439339
    867607 8sst:A (2.19) BS08 ZN ? N/A P49711 37439339
    867608 8sst:A (2.19) BS09 ZN ? N/A P49711 37439339
    867609 8sst:D (2.19) BS01 dna ? N/A P49711 37439339
    867610 8sst:D (2.19) BS02 dna ? N/A P49711 37439339
    867611 8sst:D (2.19) BS03 ZN ? N/A P49711 37439339
    867612 8sst:D (2.19) BS04 ZN ? N/A P49711 37439339
    867613 8sst:D (2.19) BS05 ZN ? N/A P49711 37439339
    867614 8sst:D (2.19) BS06 ZN ? N/A P49711 37439339
    867615 8sst:D (2.19) BS07 ZN ? N/A P49711 37439339
    867616 8sst:D (2.19) BS08 ZN ? N/A P49711 37439339
    867617 8sst:D (2.19) BS09 ZN ? N/A P49711 37439339
    867618 8ssu:A (2.89) BS01 dna ? N/A P49711
    Q86U70    		 37439339
    867619 8ssu:A (2.89) BS02 dna ? N/A P49711
    Q86U70    		 37439339
    867620 8ssu:A (2.89) BS03 ZN ? N/A P49711
    Q86U70    		 37439339
    867621 8ssu:A (2.89) BS04 ZN ? N/A P49711
    Q86U70    		 37439339
    867622 8ssu:A (2.89) BS05 ZN ? N/A P49711
    Q86U70    		 37439339
    867623 8ssu:A (2.89) BS06 ZN ? N/A P49711
    Q86U70    		 37439339
    867624 8ssu:A (2.89) BS07 ZN ? N/A P49711
    Q86U70    		 37439339
    867625 8ssu:A (2.89) BS08 ZN ? N/A P49711
    Q86U70    		 37439339
    867626 8ssu:A (2.89) BS09 ZN ? N/A P49711
    Q86U70    		 37439339
    867627 8ssu:A (2.89) BS10 ZN ? N/A P49711
    Q86U70    		 37439339
    867628 8ssw:A (2.4) BS01 rna 3.6.4.13 N/A O00571 N/A
    867629 8ssw:A (2.4) BS02 rna 3.6.4.13 N/A O00571 N/A
    867630 8ssw:A (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    867631 8ssw:B (2.4) BS01 rna 3.6.4.13 N/A O00571 N/A
    867632 8ssw:B (2.4) BS02 rna 3.6.4.13 N/A O00571 N/A
    867633 8ssw:B (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    867634 8ssy:A (1.8) BS01 DSN 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    867635 8ssy:B (1.8) BS01 DSN 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    867636 8ssz:A (2.64) BS01 ACH ? GO:0004888 ... P43681 38454578
    867637 8ssz:A (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    867638 8ssz:B (2.64) BS01 ACH ? GO:0001666 ... P17787 38454578
    867639 8ssz:D (2.64) BS01 ACH ? GO:0004888 ... P43681 38454578
    867640 8ssz:D (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    867641 8st0:A (2.4) BS01 ACH ? GO:0004888 ... P43681 38454578
    867642 8st0:B (2.4) BS01 ACH ? GO:0001666 ... P17787 38454578
    867643 8st0:D (2.4) BS01 ACH ? GO:0004888 ... P43681 38454578
    867644 8st1:A (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    867645 8st1:A (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    867646 8st1:B (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    867647 8st1:D (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    867648 8st1:D (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    867649 8st2:A (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    867650 8st2:B (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    867651 8st2:C (2.94) BS01 ACH ? GO:0004888 ... P17787 38454578
    867652 8st2:D (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    867653 8st2:E (2.94) BS01 ACH ? GO:0004888 ... P17787 38454578
    867654 8st3:A (2.93) BS01 ACH ? GO:0004888 ... P43681 38454578
    867655 8st3:A (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    867656 8st3:B (2.93) BS01 ACH ? GO:0004888 ... P17787 38454578
    867657 8st3:D (2.93) BS01 ACH ? GO:0004888 ... P43681 38454578
    867658 8st3:D (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    867659 8st3:E (2.93) BS01 ACH ? GO:0004888 ... P17787 38454578
    867660 8st4:A (2.35) BS01 ACH ? GO:0004888 ... P43681 38454578
    867661 8st4:B (2.35) BS01 ACH ? GO:0004888 ... P17787 38454578
    867662 8st4:D (2.35) BS01 ACH ? GO:0004888 ... P43681 38454578
    867663 8st4:E (2.35) BS01 ACH ? GO:0004888 ... P17787 38454578
    867664 8st6:A (1.45) BS01 USR ? N/A A8AWU7 N/A
    867665 8st7:A (1.44) BS01 AYE ? GO:0004842 ... A0A2V2RSR1 38091999
    867666 8st7:B (1.44) BS01 AYE ? N/A P0CG48 38091999
    867667 8st7:C (1.44) BS01 AYE ? GO:0004842 ... A0A2V2RSR1 38091999
    867668 8st7:D (1.44) BS01 AYE ? N/A P0CG48 38091999
    867669 8st8:A (1.75) BS01 AYE 2.3.2.26 GO:0004842 ... Q8ZNR3 38091999
    867670 8st9:A (2.5) BS01 AYE 2.3.2.26 GO:0004842 ... A0A0H3JDV8 38091999
    867671 8st9:C (2.5) BS01 AYE 2.3.2.26 GO:0004842 ... A0A0H3JDV8 38091999
    867672 8stc:D (2.8) BS01 MG N/A GO:0005886 ... F9UST0 N/A
    867673 8std:A (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867674 8std:A (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867675 8std:B (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867676 8std:B (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867677 8std:C (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867678 8std:D (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867679 8std:D (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867680 8std:E (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867681 8std:F (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    867682 8ste:A (3.34) BS01 FUN ? GO:0006811 ... P55011 36306358
    867683 8ste:B (3.34) BS01 FUN ? GO:0006811 ... P55011 36306358
    867684 8stg:A (3.79) BS01 WCJ 2.7.10.1 GO:0004672 ... P21802 37270847
    867685 8stg:B (3.79) BS01 WCJ 2.7.10.1 GO:0004672 ... P21802 37270847
    867686 8sth:A (1.97) BS01 WWU ? GO:0002218 ... Q86WV6 37486969
    867687 8sti:A (1.72) BS01 WX8 ? GO:0002218 ... Q86WV6 37486969
    867688 8stm:A (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    867689 8stm:B (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    867690 8stm:C (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    867691 8stm:D (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    867692 8stn:A (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    867693 8stn:B (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    867694 8stp:A (3.09) BS01 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867695 8stq:A (2.955) BS01 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867696 8stq:A (2.955) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867697 8stq:A (2.955) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867698 8str:A (2.77) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867699 8sts:A (3.02) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867700 8sts:A (3.02) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867701 8sts:C (3.02) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867702 8sts:C (3.02) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867703 8stt:A (2.62) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867704 8stt:A (2.62) BS02 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867705 8stt:C (2.62) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867706 8stt:C (2.62) BS02 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867707 8stu:A (2.76) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867708 8stu:A (2.76) BS02 H9Y 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867709 8stv:A (2.78) BS01 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867710 8stv:C (2.78) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867711 8stv:C (2.78) BS02 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    867712 8stw:A (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    867713 8stw:A (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    867714 8stw:B (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    867715 8stw:B (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    867716 8stw:C (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    867717 8stw:C (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    867718 8stw:D (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    867719 8stw:D (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    867720 8stw:E (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    867721 8stw:E (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    867722 8stw:F (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    867723 8stw:F (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    867724 8sty:A (1.9) BS01 WGE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37561993
    867725 8stz:A (1.85) BS01 WGI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37561993
    867726 8su1:A (1.37) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867727 8su1:A (1.37) BS02 210 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867728 8su2:A (1.33) BS01 RIS 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867729 8su2:A (1.33) BS02 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867730 8su3:A (1.29) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867731 8su3:A (1.29) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867732 8su3:A (1.29) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867733 8su4:A (1.43) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867734 8su4:A (1.43) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867735 8su4:A (1.43) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867736 8su5:A (1.48) BS01 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867737 8su5:A (1.48) BS02 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867738 8su5:A (1.48) BS03 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    867739 8su6:A (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    867740 8su6:B (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    867741 8su8:A (2.01) BS01 XE2 ? GO:0005856 ... O00522 37974623
    867742 8su8:B (2.01) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    867743 8su8:B (2.01) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    867744 8su9:A (2.83) BS01 AR6 N/A N/A N/A 38096827
    867745 8su9:B (2.83) BS01 AR6 N/A N/A N/A 38096827
    867746 8su9:C (2.83) BS01 AR6 N/A N/A N/A 38096827
    867747 8su9:D (2.83) BS01 AR6 N/A N/A N/A 38096827
    867748 8su9:E (2.83) BS01 AR6 N/A N/A N/A 38096827
    867749 8su9:F (2.83) BS01 AR6 N/A N/A N/A 38096827
    867750 8su9:G (2.83) BS01 AR6 N/A N/A N/A 38096827
    867751 8su9:H (2.83) BS01 AR6 N/A N/A N/A 38096827
    867752 8su9:I (2.83) BS01 AR6 N/A N/A N/A 38096827
    867753 8su9:J (2.83) BS01 AR6 N/A N/A N/A 38096827
    867754 8su9:K (2.83) BS01 AR6 N/A N/A N/A 38096827
    867755 8su9:L (2.83) BS01 AR6 N/A N/A N/A 38096827
    867756 8su9:M (2.83) BS01 ADP N/A N/A N/A 38096827
    867757 8su9:N (2.83) BS01 ADP N/A N/A N/A 38096827
    867758 8su9:O (2.83) BS01 ADP N/A N/A N/A 38096827
    867759 8su9:P (2.83) BS01 ADP N/A N/A N/A 38096827
    867760 8su9:Q (2.83) BS01 ADP N/A N/A N/A 38096827
    867761 8sua:A (1.6) BS01 YT9 N/A GO:0003677 ... N/A 37945601
    867762 8sub:A (2.89) BS01 AR6 N/A N/A N/A 38096827
    867763 8sub:B (2.89) BS01 AR6 N/A N/A N/A 38096827
    867764 8sub:C (2.89) BS01 AR6 N/A N/A N/A 38096827
    867765 8sub:D (2.89) BS01 AR6 N/A N/A N/A 38096827
    867766 8sub:E (2.89) BS01 AR6 N/A N/A N/A 38096827
    867767 8sub:F (2.89) BS01 AR6 N/A N/A N/A 38096827
    867768 8sub:G (2.89) BS01 AR6 N/A N/A N/A 38096827
    867769 8sub:H (2.89) BS01 AR6 N/A N/A N/A 38096827
    867770 8sub:I (2.89) BS01 AR6 N/A N/A N/A 38096827
    867771 8sub:J (2.89) BS01 AR6 N/A N/A N/A 38096827
    867772 8sub:K (2.89) BS01 AR6 N/A N/A N/A 38096827
    867773 8sub:L (2.89) BS01 AR6 N/A N/A N/A 38096827
    867774 8sub:M (2.89) BS01 ADP N/A N/A N/A 38096827
    867775 8sub:N (2.89) BS01 ADP N/A N/A N/A 38096827
    867776 8sub:O (2.89) BS01 ADP N/A N/A N/A 38096827
    867777 8sub:P (2.89) BS01 ADP N/A N/A N/A 38096827
    867778 8sub:Q (2.89) BS01 ADP N/A N/A N/A 38096827
    867779 8sub:Q (2.89) BS02 MG N/A N/A N/A 38096827
    867780 8suc:A (1.4) BS01 MG 2.3.2.27 N/A Q19818 N/A
    867781 8sud:A (2.1) BS01 peptide ? GO:0005737 ... P52293 38108201
    867782 8suf:C (4.0) BS01 MAN ? N/A Q9N5Z3 N/A
    867783 8sui:B (2.0) BS01 SER 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    867784 8suk:C (2.45) BS01 dna N/A GO:0003677 ... N/A 37945601
    867785 8suk:D (2.45) BS01 dna N/A GO:0003677 ... N/A 37945601
    867786 8sun:A (3.12) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    867787 8sun:B (3.12) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    867788 8sun:B (3.12) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    867789 8sun:B (3.12) BS03 JRF ? GO:0002407 ... Q6P9J9 37573365
    867790 8sur:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    867791 8sur:A (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    867792 8sur:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    867793 8sur:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    867794 8sur:B (3.1) BS03 CA ? GO:0002407 ... Q6P9J9 37573365
    867795 8sut:A (1.93) BS01 IO9 ? GO:0003824 ... O06724 38047707
    867796 8sut:A (1.93) BS02 MN ? GO:0003824 ... O06724 38047707
    867797 8sut:B (1.93) BS01 MN ? GO:0003824 ... O06724 38047707
    867798 8sut:B (1.93) BS02 IO9 ? GO:0003824 ... O06724 38047707
    867799 8suu:A (2.26) BS01 MN ? GO:0003824 ... O06724 38047707
    867800 8suu:B (2.26) BS01 MN ? GO:0003824 ... O06724 38047707
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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