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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    867401 8srr:B (3.22) BS01 M7G N/A N/A P52298 N/A
    867402 8srs:A (2.79) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    867403 8srs:A (2.79) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    867404 8srs:A (2.79) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    867405 8srs:A (2.79) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    867406 8srs:A (2.79) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    867407 8srs:A (2.79) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    867408 8srx:A (2.09) BS01 K6G ? GO:0042981 ... Q16611 38088212
    867409 8srx:A (2.09) BS02 ZN ? GO:0042981 ... Q16611 38088212
    867410 8srx:A (2.09) BS03 K6G ? GO:0042981 ... Q16611 38088212
    867411 8srx:B (2.09) BS01 K6G ? GO:0042981 ... Q07812 38088212
    867412 8srx:B (2.09) BS02 K6G ? GO:0042981 ... Q07812 38088212
    867413 8srx:C (2.09) BS01 K6G ? GO:0042981 ... Q16611 38088212
    867414 8srx:C (2.09) BS02 K6G ? GO:0042981 ... Q16611 38088212
    867415 8srx:D (2.09) BS01 K6G ? GO:0042981 ... Q07812 38088212
    867416 8ss0:A (2.25) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 38206808
    867417 8ss0:A (2.25) BS02 WQR 1.14.14.154 GO:0004497 ... Q16850 38206808
    867418 8ss0:B (2.25) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 38206808
    867419 8ss0:B (2.25) BS02 WQR 1.14.14.154 GO:0004497 ... Q16850 38206808
    867420 8ss2:A (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867421 8ss2:A (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867422 8ss2:A (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867423 8ss2:A (3.58) BS04 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867424 8ss2:B (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867425 8ss2:C (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867426 8ss2:C (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867427 8ss2:C (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867428 8ss2:D (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867429 8ss3:A (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867430 8ss3:A (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867431 8ss3:A (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867432 8ss3:A (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867433 8ss3:A (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867434 8ss3:A (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867435 8ss3:A (3.21) BS07 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867436 8ss3:B (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867437 8ss3:C (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867438 8ss3:C (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867439 8ss3:C (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867440 8ss3:C (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867441 8ss3:C (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867442 8ss3:C (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867443 8ss3:D (3.21) BS01 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867444 8ss3:D (3.21) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867445 8ss4:A (3.3) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867446 8ss6:A (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867447 8ss6:A (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867448 8ss6:A (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867449 8ss6:A (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867450 8ss6:B (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867451 8ss6:B (3.01) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867452 8ss6:B (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867453 8ss6:B (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867454 8ss6:B (3.01) BS05 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867455 8ss6:C (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867456 8ss6:C (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867457 8ss6:C (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867458 8ss6:C (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867459 8ss6:D (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867460 8ss6:D (3.01) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867461 8ss6:D (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867462 8ss6:D (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867463 8ss7:A (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867464 8ss7:A (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867465 8ss7:A (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867466 8ss7:A (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867467 8ss7:A (2.76) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867468 8ss7:B (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867469 8ss7:B (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867470 8ss7:B (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867471 8ss7:C (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867472 8ss7:C (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867473 8ss7:C (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867474 8ss7:C (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867475 8ss7:D (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867476 8ss7:D (2.76) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867477 8ss7:D (2.76) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867478 8ss7:D (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867479 8ss8:A (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867480 8ss8:A (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867481 8ss8:B (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867482 8ss8:B (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867483 8ss8:C (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867484 8ss8:C (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867485 8ss8:C (2.81) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867486 8ss8:D (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867487 8ss8:D (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867488 8ss9:A (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867489 8ss9:A (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867490 8ss9:A (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867491 8ss9:B (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867492 8ss9:B (2.72) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867493 8ss9:B (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867494 8ss9:C (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867495 8ss9:C (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867496 8ss9:C (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867497 8ss9:D (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867498 8ss9:D (2.72) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867499 8ss9:D (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867500 8ssa:A (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867501 8ssa:A (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867502 8ssa:B (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867503 8ssa:C (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867504 8ssa:C (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867505 8ssa:D (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867506 8ssb:A (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867507 8ssb:A (3.66) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867508 8ssb:B (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867509 8ssb:C (3.66) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867510 8ssb:C (3.66) BS02 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867511 8ssb:D (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    867512 8sse:A (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    867513 8sse:B (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    867514 8sse:C (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    867515 8sse:D (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    867516 8sse:E (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    867517 8sse:F (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    867518 8ssh:A (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    867519 8ssh:B (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    867520 8ssh:C (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    867521 8ssh:D (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    867522 8ssi:A (2.5) BS01 AYE ? N/A Q63K53 N/A
    867523 8ssi:C (2.5) BS01 AYE ? N/A Q63K53 N/A
    867524 8ssk:A (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    867525 8ssk:B (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    867526 8ssk:C (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    867527 8ssk:D (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    867528 8ssl:A (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    867529 8ssl:A (4.6) BS02 MG 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    867530 8ssl:B (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    867531 8ssl:C (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    867532 8ssn:A (2.86) BS01 AY7 2.7.10.2 GO:0004672 ... P00519 37590418
    867533 8ssn:A (2.86) BS02 SKI 2.7.10.2 GO:0004672 ... P00519 37590418
    867534 8ssn:B (2.86) BS01 AY7 2.7.10.2 GO:0004672 ... P00519 37590418
    867535 8ssn:B (2.86) BS02 SKI 2.7.10.2 GO:0004672 ... P00519 37590418
    867536 8sso:A (1.97) BS01 627 2.7.11.1 GO:0000212 ... O14965 37590418
    867537 8sso:D (1.97) BS01 627 2.7.11.1 GO:0000212 ... O14965 37590418
    867538 8ssp:A (2.6) BS01 PDO 2.7.11.1 GO:0000212 ... O14965 37590418
    867539 8ssp:A (2.6) BS02 627 2.7.11.1 GO:0000212 ... O14965 37590418
    867540 8ssq:A (3.12) BS01 dna ? N/A P49711 37439339
    867541 8ssq:A (3.12) BS02 dna ? N/A P49711 37439339
    867542 8ssq:A (3.12) BS03 ZN ? N/A P49711 37439339
    867543 8ssq:A (3.12) BS04 ZN ? N/A P49711 37439339
    867544 8ssq:A (3.12) BS05 ZN ? N/A P49711 37439339
    867545 8ssq:A (3.12) BS06 ZN ? N/A P49711 37439339
    867546 8ssq:A (3.12) BS07 ZN ? N/A P49711 37439339
    867547 8ssq:A (3.12) BS08 ZN ? N/A P49711 37439339
    867548 8ssq:A (3.12) BS09 ZN ? N/A P49711 37439339
    867549 8ssq:A (3.12) BS10 ZN ? N/A P49711 37439339
    867550 8ssq:A (3.12) BS11 ZN ? N/A P49711 37439339
    867551 8ssq:D (3.12) BS01 dna ? N/A P49711 37439339
    867552 8ssq:D (3.12) BS02 dna ? N/A P49711 37439339
    867553 8ssq:D (3.12) BS03 ZN ? N/A P49711 37439339
    867554 8ssq:D (3.12) BS04 ZN ? N/A P49711 37439339
    867555 8ssq:D (3.12) BS05 ZN ? N/A P49711 37439339
    867556 8ssq:D (3.12) BS06 ZN ? N/A P49711 37439339
    867557 8ssq:D (3.12) BS07 ZN ? N/A P49711 37439339
    867558 8ssq:D (3.12) BS08 ZN ? N/A P49711 37439339
    867559 8ssq:D (3.12) BS09 ZN ? N/A P49711 37439339
    867560 8ssq:D (3.12) BS10 ZN ? N/A P49711 37439339
    867561 8ssr:A (3.14) BS01 dna ? N/A P49711 37439339
    867562 8ssr:A (3.14) BS02 dna ? N/A P49711 37439339
    867563 8ssr:A (3.14) BS03 ZN ? N/A P49711 37439339
    867564 8ssr:A (3.14) BS04 ZN ? N/A P49711 37439339
    867565 8ssr:A (3.14) BS05 ZN ? N/A P49711 37439339
    867566 8ssr:A (3.14) BS06 ZN ? N/A P49711 37439339
    867567 8ssr:A (3.14) BS07 ZN ? N/A P49711 37439339
    867568 8ssr:A (3.14) BS08 ZN ? N/A P49711 37439339
    867569 8ssr:A (3.14) BS09 ZN ? N/A P49711 37439339
    867570 8ssr:A (3.14) BS10 ZN ? N/A P49711 37439339
    867571 8ssr:A (3.14) BS11 ZN ? N/A P49711 37439339
    867572 8ssr:D (3.14) BS01 dna ? N/A P49711 37439339
    867573 8ssr:D (3.14) BS02 dna ? N/A P49711 37439339
    867574 8ssr:D (3.14) BS03 ZN ? N/A P49711 37439339
    867575 8ssr:D (3.14) BS04 ZN ? N/A P49711 37439339
    867576 8ssr:D (3.14) BS05 ZN ? N/A P49711 37439339
    867577 8ssr:D (3.14) BS06 ZN ? N/A P49711 37439339
    867578 8ssr:D (3.14) BS07 ZN ? N/A P49711 37439339
    867579 8ssr:D (3.14) BS08 ZN ? N/A P49711 37439339
    867580 8ssr:D (3.14) BS09 ZN ? N/A P49711 37439339
    867581 8ssr:D (3.14) BS10 ZN ? N/A P49711 37439339
    867582 8sss:A (2.3) BS01 dna ? N/A P49711 37439339
    867583 8sss:A (2.3) BS02 dna ? N/A P49711 37439339
    867584 8sss:A (2.3) BS03 ZN ? N/A P49711 37439339
    867585 8sss:A (2.3) BS04 ZN ? N/A P49711 37439339
    867586 8sss:A (2.3) BS05 ZN ? N/A P49711 37439339
    867587 8sss:A (2.3) BS06 ZN ? N/A P49711 37439339
    867588 8sss:A (2.3) BS07 ZN ? N/A P49711 37439339
    867589 8sss:A (2.3) BS08 ZN ? N/A P49711 37439339
    867590 8sss:A (2.3) BS09 ZN ? N/A P49711 37439339
    867591 8sss:D (2.3) BS01 dna ? N/A P49711 37439339
    867592 8sss:D (2.3) BS02 dna ? N/A P49711 37439339
    867593 8sss:D (2.3) BS03 ZN ? N/A P49711 37439339
    867594 8sss:D (2.3) BS04 ZN ? N/A P49711 37439339
    867595 8sss:D (2.3) BS05 ZN ? N/A P49711 37439339
    867596 8sss:D (2.3) BS06 ZN ? N/A P49711 37439339
    867597 8sss:D (2.3) BS07 ZN ? N/A P49711 37439339
    867598 8sss:D (2.3) BS08 ZN ? N/A P49711 37439339
    867599 8sss:D (2.3) BS09 ZN ? N/A P49711 37439339
    867600 8sst:A (2.19) BS01 dna ? N/A P49711 37439339
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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