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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    867001 8sr7:C (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    867002 8sr7:D (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867003 8sr7:D (1.97) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867004 8sr7:D (1.97) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867005 8sr7:D (1.97) BS04 RP5 ? GO:0005216 ... F2UB89 38773335
    867006 8sr7:D (1.97) BS05 AMP ? GO:0005216 ... F2UB89 38773335
    867007 8sr7:D (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    867008 8sr7:D (1.97) BS07 MG ? GO:0005216 ... F2UB89 38773335
    867009 8sr7:D (1.97) BS08 MG ? GO:0005216 ... F2UB89 38773335
    867010 8sr7:D (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    867011 8sr8:A (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867012 8sr8:A (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867013 8sr8:A (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867014 8sr8:A (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867015 8sr8:B (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867016 8sr8:B (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867017 8sr8:B (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867018 8sr8:B (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867019 8sr8:C (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867020 8sr8:C (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867021 8sr8:C (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867022 8sr8:C (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867023 8sr8:D (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867024 8sr8:D (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867025 8sr8:D (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867026 8sr8:D (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867027 8sr9:A (3.05) BS01 MG ? GO:0005216 ... F2UB89 38773335
    867028 8sr9:A (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    867029 8sr9:A (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867030 8sr9:A (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867031 8sr9:A (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867032 8sr9:A (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867033 8sr9:B (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867034 8sr9:B (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    867035 8sr9:B (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    867036 8sr9:B (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867037 8sr9:B (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867038 8sr9:B (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867039 8sr9:C (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867040 8sr9:C (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    867041 8sr9:C (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    867042 8sr9:C (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867043 8sr9:C (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867044 8sr9:C (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867045 8sr9:D (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867046 8sr9:D (3.05) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867047 8sr9:D (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867048 8sr9:D (3.05) BS04 MG ? GO:0005216 ... F2UB89 38773335
    867049 8sr9:D (3.05) BS05 MG ? GO:0005216 ... F2UB89 38773335
    867050 8sr9:D (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867051 8sra:A (2.93) BS01 CA ? GO:0005216 ... F2UB89 38773335
    867052 8sra:A (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    867053 8sra:A (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867054 8sra:A (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867055 8sra:A (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867056 8sra:A (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867057 8sra:B (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867058 8sra:B (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    867059 8sra:B (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    867060 8sra:B (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867061 8sra:B (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867062 8sra:B (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867063 8sra:C (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867064 8sra:C (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    867065 8sra:C (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    867066 8sra:C (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867067 8sra:C (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867068 8sra:C (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867069 8sra:D (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867070 8sra:D (2.93) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867071 8sra:D (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867072 8sra:D (2.93) BS04 CA ? GO:0005216 ... F2UB89 38773335
    867073 8sra:D (2.93) BS05 CA ? GO:0005216 ... F2UB89 38773335
    867074 8sra:D (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867075 8srb:A (2.82) BS01 APR ? GO:0005216 ... F2UB89 38773335
    867076 8srb:A (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867077 8srb:A (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867078 8srb:A (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867079 8srb:A (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867080 8srb:B (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867081 8srb:B (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    867082 8srb:B (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867083 8srb:B (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867084 8srb:B (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867085 8srb:C (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867086 8srb:C (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    867087 8srb:C (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867088 8srb:C (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    867089 8srb:C (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867090 8srb:D (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867091 8srb:D (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867092 8srb:D (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867093 8srb:D (2.82) BS04 APR ? GO:0005216 ... F2UB89 38773335
    867094 8srb:D (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    867095 8src:A (2.92) BS01 APR ? GO:0005216 ... F2UB89 38773335
    867096 8src:A (2.92) BS02 CA ? GO:0005216 ... F2UB89 38773335
    867097 8src:A (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    867098 8src:A (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    867099 8src:A (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    867100 8src:A (2.92) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    867101 8src:A (2.92) BS07 APR ? GO:0005216 ... F2UB89 38773335
    867102 8src:A (2.92) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    867103 8src:A (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    867104 8src:A (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    867105 8src:B (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867106 8src:B (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    867107 8src:B (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    867108 8src:B (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    867109 8src:B (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    867110 8src:B (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    867111 8src:B (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    867112 8src:B (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    867113 8src:B (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    867114 8src:B (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    867115 8src:C (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867116 8src:C (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    867117 8src:C (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    867118 8src:C (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    867119 8src:C (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    867120 8src:C (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    867121 8src:C (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    867122 8src:C (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    867123 8src:C (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    867124 8src:C (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    867125 8src:D (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    867126 8src:D (2.92) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    867127 8src:D (2.92) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    867128 8src:D (2.92) BS04 APR ? GO:0005216 ... F2UB89 38773335
    867129 8src:D (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    867130 8src:D (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    867131 8src:D (2.92) BS07 CA ? GO:0005216 ... F2UB89 38773335
    867132 8src:D (2.92) BS08 CA ? GO:0005216 ... F2UB89 38773335
    867133 8src:D (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    867134 8src:D (2.92) BS10 APR ? GO:0005216 ... F2UB89 38773335
    867135 8srd:A (2.91) BS01 APR ? GO:0005216 ... F2UB89 N/A
    867136 8srd:A (2.91) BS02 MG ? GO:0005216 ... F2UB89 N/A
    867137 8srd:A (2.91) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    867138 8srd:A (2.91) BS04 APR ? GO:0005216 ... F2UB89 N/A
    867139 8srd:A (2.91) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    867140 8srd:A (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    867141 8srd:B (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    867142 8srd:B (2.91) BS02 APR ? GO:0005216 ... F2UB89 N/A
    867143 8srd:B (2.91) BS03 MG ? GO:0005216 ... F2UB89 N/A
    867144 8srd:B (2.91) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    867145 8srd:B (2.91) BS05 APR ? GO:0005216 ... F2UB89 N/A
    867146 8srd:B (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    867147 8srd:C (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    867148 8srd:C (2.91) BS02 APR ? GO:0005216 ... F2UB89 N/A
    867149 8srd:C (2.91) BS03 MG ? GO:0005216 ... F2UB89 N/A
    867150 8srd:C (2.91) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    867151 8srd:C (2.91) BS05 APR ? GO:0005216 ... F2UB89 N/A
    867152 8srd:C (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    867153 8srd:D (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    867154 8srd:D (2.91) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    867155 8srd:D (2.91) BS03 APR ? GO:0005216 ... F2UB89 N/A
    867156 8srd:D (2.91) BS04 MG ? GO:0005216 ... F2UB89 N/A
    867157 8srd:D (2.91) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    867158 8srd:D (2.91) BS06 APR ? GO:0005216 ... F2UB89 N/A
    867159 8sre:A (2.52) BS01 APR ? GO:0005216 ... F2UB89 N/A
    867160 8sre:A (2.52) BS02 MG ? GO:0005216 ... F2UB89 N/A
    867161 8sre:A (2.52) BS03 MG ? GO:0005216 ... F2UB89 N/A
    867162 8sre:A (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    867163 8sre:A (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    867164 8sre:A (2.52) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    867165 8sre:A (2.52) BS07 APR ? GO:0005216 ... F2UB89 N/A
    867166 8sre:A (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    867167 8sre:A (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    867168 8sre:A (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    867169 8sre:B (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    867170 8sre:B (2.52) BS02 APR ? GO:0005216 ... F2UB89 N/A
    867171 8sre:B (2.52) BS03 MG ? GO:0005216 ... F2UB89 N/A
    867172 8sre:B (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    867173 8sre:B (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    867174 8sre:B (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    867175 8sre:B (2.52) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    867176 8sre:B (2.52) BS08 APR ? GO:0005216 ... F2UB89 N/A
    867177 8sre:B (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    867178 8sre:B (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    867179 8sre:C (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    867180 8sre:C (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    867181 8sre:C (2.52) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    867182 8sre:C (2.52) BS04 APR ? GO:0005216 ... F2UB89 N/A
    867183 8sre:C (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    867184 8sre:C (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    867185 8sre:C (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    867186 8sre:C (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    867187 8sre:C (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    867188 8sre:C (2.52) BS10 APR ? GO:0005216 ... F2UB89 N/A
    867189 8sre:D (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    867190 8sre:D (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    867191 8sre:D (2.52) BS03 APR ? GO:0005216 ... F2UB89 N/A
    867192 8sre:D (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    867193 8sre:D (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    867194 8sre:D (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    867195 8sre:D (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    867196 8sre:D (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    867197 8sre:D (2.52) BS09 APR ? GO:0005216 ... F2UB89 N/A
    867198 8sre:D (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    867199 8srf:A (2.52) BS01 RP5 ? GO:0005216 ... F2UB89 N/A
    867200 8srf:A (2.52) BS02 AMP ? GO:0005216 ... F2UB89 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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