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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    866001 8sn1:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    866002 8sn1:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    866003 8sn1:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    866004 8sn1:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    866005 8sn1:H (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    866006 8sn1:K (3.3) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866007 8sn1:K (3.3) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866008 8sn2:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    866009 8sn2:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    866010 8sn2:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    866011 8sn2:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    866012 8sn2:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    866013 8sn2:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    866014 8sn2:D (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    866015 8sn2:D (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    866016 8sn2:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    866017 8sn2:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    866018 8sn2:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    866019 8sn2:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    866020 8sn2:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    866021 8sn2:H (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    866022 8sn2:H (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    866023 8sn2:K (3.6) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866024 8sn2:K (3.6) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866025 8sn3:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    866026 8sn3:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    866027 8sn3:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    866028 8sn3:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    866029 8sn3:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    866030 8sn3:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    866031 8sn3:D (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    866032 8sn3:D (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    866033 8sn3:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    866034 8sn3:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    866035 8sn3:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    866036 8sn3:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    866037 8sn3:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    866038 8sn3:H (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    866039 8sn3:H (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    866040 8sn3:K (3.8) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866041 8sn3:K (3.8) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866042 8sn3:L (3.8) BS01 dna 2.3.2.23
    2.3.2.24    		 GO:0000122 ... P61077 38242129
    866043 8sn3:M (3.8) BS01 dna ? N/A P0CG47 38242129
    866044 8sn4:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866045 8sn4:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866046 8sn4:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866047 8sn4:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    866048 8sn4:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866049 8sn4:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866050 8sn4:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866051 8sn4:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    866052 8sn4:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866053 8sn4:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866054 8sn4:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866055 8sn4:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    866056 8sn4:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866057 8sn4:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866058 8sn4:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866059 8sn4:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    866060 8sn4:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866061 8sn4:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866062 8sn4:M (3.7) BS01 dna ? N/A P0CG47 38242129
    866063 8sn5:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    866064 8sn5:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    866065 8sn5:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    866066 8sn5:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    866067 8sn5:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    866068 8sn5:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    866069 8sn5:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    866070 8sn5:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    866071 8sn5:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    866072 8sn5:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    866073 8sn5:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    866074 8sn5:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    866075 8sn5:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    866076 8sn5:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    866077 8sn5:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    866078 8sn5:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    866079 8sn5:K (3.9) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866080 8sn5:K (3.9) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866081 8sn6:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866082 8sn6:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866083 8sn6:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866084 8sn6:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866085 8sn6:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866086 8sn6:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866087 8sn6:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    866088 8sn6:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866089 8sn6:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866090 8sn6:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866091 8sn6:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    866092 8sn6:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866093 8sn6:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866094 8sn6:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866095 8sn6:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    866096 8sn6:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866097 8sn6:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866098 8sn7:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866099 8sn7:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866100 8sn7:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866101 8sn7:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    866102 8sn7:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866103 8sn7:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866104 8sn7:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866105 8sn7:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    866106 8sn7:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866107 8sn7:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866108 8sn7:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866109 8sn7:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    866110 8sn7:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866111 8sn7:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866112 8sn7:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866113 8sn7:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    866114 8sn7:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866115 8sn7:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866116 8sn8:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866117 8sn8:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866118 8sn8:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866119 8sn8:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    866120 8sn8:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866121 8sn8:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866122 8sn8:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866123 8sn8:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    866124 8sn8:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    866125 8sn8:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    866126 8sn8:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    866127 8sn8:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    866128 8sn8:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    866129 8sn8:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    866130 8sn8:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866131 8sn8:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866132 8sn9:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    866133 8sn9:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    866134 8sn9:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    866135 8sn9:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    866136 8sn9:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    866137 8sn9:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    866138 8sn9:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    866139 8sn9:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    866140 8sn9:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    866141 8sn9:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    866142 8sn9:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    866143 8sn9:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    866144 8sn9:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    866145 8sn9:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    866146 8sn9:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    866147 8sn9:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    866148 8sn9:K (3.9) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866149 8sn9:K (3.9) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866150 8sna:A (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    866151 8sna:A (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    866152 8sna:B (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    866153 8sna:B (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    866154 8sna:C (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    866155 8sna:C (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    866156 8sna:D (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    866157 8sna:D (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    866158 8sna:E (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    866159 8sna:E (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    866160 8sna:F (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    866161 8sna:F (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    866162 8sna:G (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    866163 8sna:G (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    866164 8sna:H (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    866165 8sna:H (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    866166 8sna:K (4.0) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866167 8sna:K (4.0) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    866168 8snb:1y (3.3) BS01 peptide ? GO:0005813 ... A0A7M7PGM9 37327785
    866169 8snb:2R (3.3) BS01 peptide ? GO:0005634 ... A0A7M7REB1 37327785
    866170 8snb:5F (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    866171 8snb:5G (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    866172 8snb:5H (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    866173 8snb:5J (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    866174 8snb:5N (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    866175 8snb:5N (3.3) BS02 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    866176 8snb:6M (3.3) BS01 peptide ? GO:0019902 ... A0A7M7P181 37327785
    866177 8snb:6R (3.3) BS01 peptide ? N/A A0A7M7THB5 37327785
    866178 8snb:6R (3.3) BS02 peptide ? N/A A0A7M7THB5 37327785
    866179 8snb:7U (3.3) BS01 peptide N/A N/A N/A 37327785
    866180 8snb:8F (3.3) BS01 peptide ? GO:0005929 ... Q9U0E3 37327785
    866181 8snb:8K (3.3) BS01 peptide ? GO:0005737 ... A0A7M7SXG5 37327785
    866182 8snb:8S (3.3) BS01 peptide ? GO:0005737 ... Q26623 37327785
    866183 8snb:AA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866184 8snb:AB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866185 8snb:AC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    866186 8snb:AC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    866187 8snb:AD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    866188 8snb:AE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866189 8snb:AF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    866190 8snb:AG (3.3) BS01 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    866191 8snb:AG (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866192 8snb:AH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    866193 8snb:AH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    866194 8snb:AI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866195 8snb:AJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    866196 8snb:AK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866197 8snb:AL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    866198 8snb:AM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866199 8snb:BA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    866200 8snb:BB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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