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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    865801 8sm8:G (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    865802 8sm8:G (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    865803 8sm8:J (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    865804 8sm8:J (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    865805 8sm9:B (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    865806 8sm9:B (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    865807 8sm9:D (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    865808 8sm9:D (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    865809 8sm9:F (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    865810 8sm9:F (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    865811 8sm9:H (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    865812 8sm9:H (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    865813 8sma:A (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    865814 8sma:A (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    865815 8sma:B (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    865816 8sma:B (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    865817 8sma:G (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    865818 8sma:G (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    865819 8sma:J (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    865820 8sma:J (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    865821 8smc:C (4.02) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38127736
    865822 8smc:C (4.02) BS02 TVT 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38127736
    865823 8smd:A (2.1) BS01 OJC ? GO:0000166 ... P0DW58 37992756
    865824 8smd:A (2.1) BS02 OJC ? GO:0000166 ... P0DW58 37992756
    865825 8smd:B (2.1) BS01 OJC ? GO:0000166 ... P0DW58 37992756
    865826 8smd:B (2.1) BS02 OJC ? GO:0000166 ... P0DW58 37992756
    865827 8smf:A (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865828 8smf:B (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865829 8smf:C (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865830 8smf:D (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865831 8smf:E (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865832 8smf:F (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865833 8smf:G (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865834 8smf:H (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    865835 8smg:B (2.1) BS01 MF6 ? GO:0046872 ... B6V311 37992756
    865836 8smh:F (1.37) BS01 dna ? GO:0003700 ... P17433 38042148
    865837 8smh:F (1.37) BS02 dna ? GO:0003700 ... P17433 38042148
    865838 8smj:F (1.39) BS01 dna ? GO:0003700 ... P17433 38042148
    865839 8smj:F (1.39) BS02 dna ? GO:0003700 ... P17433 38042148
    865840 8smk:A (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865841 8smk:A (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865842 8smk:A (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865843 8smk:A (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865844 8smk:D (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865845 8smk:D (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865846 8smk:D (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865847 8smk:D (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865848 8sml:A (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865849 8sml:A (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865850 8sml:A (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865851 8sml:D (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865852 8sml:D (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865853 8sml:D (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    865854 8smn:A (3.2) BS01 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    865855 8smn:A (3.2) BS02 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    865856 8smn:A (3.2) BS03 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    865857 8smo:A (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865858 8smo:C (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865859 8smo:E (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865860 8smo:G (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865861 8smo:I (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865862 8smo:K (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865863 8smo:M (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865864 8smo:O (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    865865 8smp:A (3.4) BS01 UDP 2.4.1.212 GO:0016020 ... P13563 N/A
    865866 8smr:C (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    865867 8smr:C (2.7) BS02 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    865868 8smr:D (2.7) BS01 I7Y ? GO:0005886 ... Q9HVY5 37751552
    865869 8smr:D (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    865870 8smr:D (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    865871 8smr:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    865872 8smr:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    865873 8smr:E (2.7) BS02 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    865874 8smr:E (2.7) BS03 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    865875 8smr:F (2.7) BS01 CA ? GO:0004129 ... Q9I3G4 37751552
    865876 8smr:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    865877 8smr:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G5 37751552
    865878 8smr:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G5 37751552
    865879 8smr:I (2.7) BS01 HEM ? GO:0005886 ... Q9HVY5 37751552
    865880 8smr:I (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    865881 8smr:I (2.7) BS03 U10 ? GO:0005886 ... Q9HVY5 37751552
    865882 8smr:I (2.7) BS04 I7Y ? GO:0005886 ... Q9HVY5 37751552
    865883 8smr:J (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    865884 8smr:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    865885 8smr:K (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    865886 8smr:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    865887 8smr:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    865888 8smr:M (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    865889 8smr:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    865890 8smr:N (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    865891 8smr:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    865892 8smr:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    865893 8smr:Z (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    865894 8smr:Z (2.7) BS02 I7Y 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    865895 8smr:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    865896 8sms:A (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    865897 8sms:B (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    865898 8smu:A (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    865899 8smu:B (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    865900 8smu:C (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    865901 8smu:C (2.45) BS02 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    865902 8smu:D (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    865903 8smw:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    865904 8smw:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    865905 8smw:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    865906 8smw:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    865907 8smw:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    865908 8smw:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    865909 8smw:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    865910 8smw:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    865911 8smw:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    865912 8smw:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    865913 8smw:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    865914 8smw:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    865915 8smw:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    865916 8smw:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    865917 8smw:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    865918 8smw:K (3.3) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865919 8smw:K (3.3) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865920 8smx:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865921 8smx:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865922 8smx:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865923 8smx:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    865924 8smx:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865925 8smx:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865926 8smx:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865927 8smx:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    865928 8smx:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865929 8smx:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865930 8smx:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865931 8smx:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    865932 8smx:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865933 8smx:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865934 8smx:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865935 8smx:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    865936 8smx:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865937 8smx:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865938 8smy:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865939 8smy:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865940 8smy:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865941 8smy:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865942 8smy:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865943 8smy:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865944 8smy:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    865945 8smy:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865946 8smy:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865947 8smy:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865948 8smy:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    865949 8smy:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865950 8smy:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865951 8smy:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865952 8smy:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    865953 8smy:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865954 8smy:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865955 8smz:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865956 8smz:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865957 8smz:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865958 8smz:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    865959 8smz:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865960 8smz:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865961 8smz:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865962 8smz:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    865963 8smz:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865964 8smz:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865965 8smz:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865966 8smz:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    865967 8smz:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865968 8smz:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865969 8smz:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865970 8smz:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865971 8smz:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865972 8sn0:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865973 8sn0:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865974 8sn0:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865975 8sn0:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    865976 8sn0:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865977 8sn0:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865978 8sn0:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865979 8sn0:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    865980 8sn0:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    865981 8sn0:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    865982 8sn0:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    865983 8sn0:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    865984 8sn0:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    865985 8sn0:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    865986 8sn0:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    865987 8sn0:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    865988 8sn0:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865989 8sn0:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    865990 8sn1:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    865991 8sn1:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    865992 8sn1:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    865993 8sn1:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    865994 8sn1:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    865995 8sn1:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    865996 8sn1:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    865997 8sn1:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    865998 8sn1:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    865999 8sn1:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    866000 8sn1:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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