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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    865601 8sjc:D (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    865602 8sjd:A (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    865603 8sjd:A (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    865604 8sjd:A (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    865605 8sjd:A (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    865606 8sjd:B (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    865607 8sjd:B (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    865608 8sjd:B (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    865609 8sjd:B (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    865610 8sjd:B (5.1) BS05 dna ? GO:0003677 ... Q25438 37491363
    865611 8sjd:C (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    865612 8sjd:C (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    865613 8sjd:C (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    865614 8sjd:D (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    865615 8sjd:D (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    865616 8sjd:D (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    865617 8sjd:D (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    865618 8sjh:A (1.6) BS01 CA N/A GO:0005506 ... N/A 37352018
    865619 8sjh:A (1.6) BS02 CA N/A GO:0005506 ... N/A 37352018
    865620 8sji:A (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    865621 8sji:C (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    865622 8sjk:A (2.22) BS01 CFF N/A N/A N/A 38958508
    865623 8sjx:A (2.5) BS01 HWP ? GO:0002088 ... Q6J8I9 N/A
    865624 8sjx:A (2.5) BS02 HWP ? GO:0002088 ... Q6J8I9 N/A
    865625 8sjx:A (2.5) BS03 HWP ? GO:0002088 ... Q6J8I9 N/A
    865626 8sjx:A (2.5) BS04 HWP ? GO:0002088 ... Q6J8I9 N/A
    865627 8sjx:A (2.5) BS05 HWP ? GO:0002088 ... Q6J8I9 N/A
    865628 8sjx:A (2.5) BS06 CLR ? GO:0002088 ... Q6J8I9 N/A
    865629 8sjy:A (2.35) BS01 HWP ? GO:0002088 ... Q6J8I9 39222068
    865630 8sjy:A (2.35) BS02 HWP ? GO:0002088 ... Q6J8I9 39222068
    865631 8sjy:A (2.35) BS03 HWP ? GO:0002088 ... Q6J8I9 39222068
    865632 8sjy:A (2.35) BS04 CLR ? GO:0002088 ... Q6J8I9 39222068
    865633 8sjy:A (2.35) BS05 CLR ? GO:0002088 ... Q6J8I9 39222068
    865634 8sjy:A (2.35) BS06 CLR ? GO:0002088 ... Q6J8I9 39222068
    865635 8sk0:A (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    865636 8sk0:A (1.51) BS02 TYD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    865637 8sk0:B (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    865638 8sk1:A (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    865639 8sk1:A (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    865640 8sk1:B (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    865641 8sk1:B (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    865642 8sk2:A (1.3) BS01 ZN 3.5.2.6 N/A C7C422 37549809
    865643 8sk2:A (1.3) BS02 ZN 3.5.2.6 N/A C7C422 37549809
    865644 8sk4:A (2.0) BS01 I3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37069799
    865645 8skb:A (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    865646 8skb:B (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    865647 8skb:C (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    865648 8skb:D (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    865649 8skf:A (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    865650 8skf:A (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    865651 8skf:B (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    865652 8skf:B (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    865653 8skh:A (1.882) BS01 A1W 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37069799
    865654 8ski:A (2.163) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    865655 8ski:A (2.163) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    865656 8ski:A (2.163) BS03 B7P 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    865657 8ski:A (2.163) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    865658 8skj:A (2.01) BS01 peptide N/A N/A N/A 37517699
    865659 8skj:B (2.01) BS01 peptide N/A N/A N/A 37517699
    865660 8skj:D (2.01) BS01 peptide N/A N/A N/A 37517699
    865661 8skj:G (2.01) BS01 peptide N/A N/A N/A 37517699
    865662 8skl:A (1.55) BS01 V2O 3.1.3.48 GO:0004725 ... P18031 37500611
    865663 8skn:A (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    865664 8skn:B (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    865665 8sko:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    865666 8sko:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    865667 8sko:A (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    865668 8sko:B (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    865669 8sko:B (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    865670 8sko:B (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    865671 8skp:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    865672 8skp:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    865673 8skp:A (1.3) BS03 WAF 3.5.2.6 GO:0008270 ... C7C422 37549809
    865674 8skr:A (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    865675 8skr:C (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    865676 8sks:A (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    865677 8sks:B (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    865678 8sks:C (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    865679 8sks:D (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    865680 8skt:A (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865681 8skt:A (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865682 8skt:A (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865683 8skt:A (2.69) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    865684 8skt:A (2.69) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    865685 8skt:A (2.69) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865686 8skt:A (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    865687 8skt:A (2.69) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    865688 8skt:C (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865689 8skt:C (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865690 8skt:C (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865691 8skt:C (2.69) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    865692 8skt:C (2.69) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865693 8skt:C (2.69) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    865694 8skt:C (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    865695 8skv:A (3.1) BS01 peptide ? N/A P01876 37872175
    865696 8skv:A (3.1) BS02 peptide ? N/A P01876 37872175
    865697 8sky:A (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    865698 8sky:A (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    865699 8sky:B (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    865700 8sky:B (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    865701 8sl1:A (3.13) BS01 ZN 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    865702 8sl1:A (3.13) BS02 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    865703 8sl1:A (3.13) BS03 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    865704 8sl7:A (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    865705 8sl7:B (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    865706 8sl7:C (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    865707 8sl7:D (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    865708 8sl9:A (1.4) BS01 H73 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q5NGA7 N/A
    865709 8sld:A (2.85) BS01 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865710 8slf:A (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865711 8slf:B (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865712 8slf:B (2.9) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865713 8slf:B (2.9) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865714 8slg:A (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865715 8slg:A (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865716 8slg:A (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865717 8slg:B (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865718 8slg:B (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865719 8slg:B (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865720 8slh:A (3.05) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865721 8slh:A (3.05) BS02 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    865722 8sli:A (4.9) BS01 CA N/A N/A F1LMD7 38923985
    865723 8sli:A (4.9) BS02 CA N/A N/A F1LMD7 38923985
    865724 8sli:B (4.9) BS01 CA N/A N/A F1LMD7 38923985
    865725 8sli:B (4.9) BS02 CA N/A N/A F1LMD7 38923985
    865726 8sli:C (4.9) BS01 CA N/A N/A F1LMD7 38923985
    865727 8sli:C (4.9) BS02 CA N/A N/A F1LMD7 38923985
    865728 8sli:D (4.9) BS01 CA N/A N/A F1LMD7 38923985
    865729 8sli:D (4.9) BS02 CA N/A N/A F1LMD7 38923985
    865730 8slm:A (2.81) BS01 MN ? GO:0016787 ... Q1J1D6 38424107
    865731 8sln:A (2.2) BS01 dna ? GO:0016787 ... Q1J1D6 38424107
    865732 8sln:A (2.2) BS02 MN ? GO:0016787 ... Q1J1D6 38424107
    865733 8slo:A (1.55) BS01 ZN 3.4.11.- GO:0006508 ... O96935 38976500
    865734 8slo:A (1.55) BS02 BYW 3.4.11.- GO:0006508 ... O96935 38976500
    865735 8slp:A (3.8) BS01 CA N/A N/A F1LMD7 38923985
    865736 8slp:A (3.8) BS02 CA N/A N/A F1LMD7 38923985
    865737 8slp:B (3.8) BS01 CA N/A N/A F1LMD7 38923985
    865738 8slp:B (3.8) BS02 CA N/A N/A F1LMD7 38923985
    865739 8slp:C (3.8) BS01 CA N/A N/A F1LMD7 38923985
    865740 8slp:C (3.8) BS02 CA N/A N/A F1LMD7 38923985
    865741 8slp:D (3.8) BS01 CA N/A N/A F1LMD7 38923985
    865742 8slp:D (3.8) BS02 CA N/A N/A F1LMD7 38923985
    865743 8slv:A (2.32) BS01 CYS 3.2.1.20 GO:0005975 ... P13080 38428508
    865744 8slv:A (2.32) BS02 PDO 3.2.1.20 GO:0005975 ... P13080 38428508
    865745 8slv:A (2.32) BS03 CA 3.2.1.20 GO:0005975 ... P13080 38428508
    865746 8slv:A (2.32) BS04 CA 3.2.1.20 GO:0005975 ... P13080 38428508
    865747 8slw:A (4.2) BS01 CA N/A N/A F1LMD7 38923985
    865748 8slw:A (4.2) BS02 CA N/A N/A F1LMD7 38923985
    865749 8slw:B (4.2) BS01 CA N/A N/A F1LMD7 38923985
    865750 8slw:B (4.2) BS02 CA N/A N/A F1LMD7 38923985
    865751 8slw:C (4.2) BS01 CA N/A N/A F1LMD7 38923985
    865752 8slw:C (4.2) BS02 CA N/A N/A F1LMD7 38923985
    865753 8slw:D (4.2) BS01 CA N/A N/A F1LMD7 38923985
    865754 8slw:D (4.2) BS02 CA N/A N/A F1LMD7 38923985
    865755 8slx:A (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865756 8slx:A (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    865757 8slx:B (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865758 8slx:C (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865759 8slx:D (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865760 8slx:D (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    865761 8sly:A (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865762 8sly:A (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    865763 8sly:A (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    865764 8sly:B (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865765 8sly:B (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    865766 8sly:B (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    865767 8sly:C (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865768 8sly:C (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    865769 8sly:C (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    865770 8sly:D (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    865771 8sly:D (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    865772 8sly:D (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    865773 8sm5:A (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    865774 8sm5:C (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    865775 8sm5:E (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    865776 8sm5:G (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    865777 8sm5:G (2.61003) BS02 peptide ? GO:0042981 ... P03182 37776275
    865778 8sm5:I (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    865779 8sm6:A (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    865780 8sm6:A (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    865781 8sm6:B (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    865782 8sm6:B (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    865783 8sm6:C (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    865784 8sm6:C (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    865785 8sm6:D (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    865786 8sm6:D (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    865787 8sm7:A (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    865788 8sm7:A (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    865789 8sm7:B (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    865790 8sm7:B (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    865791 8sm7:D (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    865792 8sm7:D (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    865793 8sm7:G (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    865794 8sm7:G (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    865795 8sm8:A (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    865796 8sm8:A (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    865797 8sm8:A (2.0) BS03 MG ? GO:0005737 ... B6JH23 38198693
    865798 8sm8:A (2.0) BS04 MG ? GO:0005737 ... B6JH23 38198693
    865799 8sm8:D (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    865800 8sm8:D (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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