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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    63001 1xw6:D (1.9) BS01 GSH 2.5.1.18 GO:0004364 ... P09488 16548513 MOAD: Kd=2.4uM
    63002 1xw7:B (2.3) BS01 peptide ? GO:0005179 ... P01308 15794638
    63003 1xw7:D (2.3) BS01 peptide ? GO:0005179 ... P01308 15794638
    63004 1xwf:A (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63005 1xwf:A (2.8) BS02 ADN 3.13.2.1 GO:0001666 ... P10760 16061414
    63006 1xwf:A (2.8) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63007 1xwf:B (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63008 1xwf:B (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63009 1xwf:B (2.8) BS03 ADN 3.13.2.1 GO:0001666 ... P10760 16061414
    63010 1xwf:C (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63011 1xwf:C (2.8) BS02 ADN 3.13.2.1 GO:0001666 ... P10760 16061414
    63012 1xwf:C (2.8) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63013 1xwf:D (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63014 1xwf:D (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 16061414
    63015 1xwf:D (2.8) BS03 ADN 3.13.2.1 GO:0001666 ... P10760 16061414
    63016 1xwh:A (-1.00) BS01 ZN ? N/A O43918 15649886
    63017 1xwh:A (-1.00) BS02 ZN ? N/A O43918 15649886
    63018 1xwj:A (2.6) BS01 peptide ? GO:0003779 ... P12003 16460027
    63019 1xwk:A (2.3) BS01 GDN 2.5.1.18 GO:0004364 ... P09488 16548513
    63020 1xwk:B (2.3) BS01 GDN 2.5.1.18 GO:0004364 ... P09488 16548513
    63021 1xwk:C (2.3) BS01 GDN 2.5.1.18 GO:0004364 ... P09488 16548513
    63022 1xwq:A (1.88) BS01 XYP 3.2.1.4 GO:0004553 ... Q8RJN8 16246370
    63023 1xwq:A (1.88) BS02 XYP 3.2.1.4 GO:0004553 ... Q8RJN8 16246370
    63024 1xws:A (1.8) BS01 BI1 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: IC50=150nM, Kd=10.0nM
    63025 1xwy:A (2.0) BS01 ZN 3.1.11.-
    3.1.13.-    		 GO:0000175 ... P27859 N/A
    63026 1xx1:A (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    63027 1xx1:B (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    63028 1xx1:C (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    63029 1xx1:D (1.75) BS01 MG 4.6.1.- GO:0005576 ... Q8I914 15654080
    63030 1xx4:A (2.2) BS01 ZN 5.3.3.8 GO:0003824 ... P23965 15883186
    63031 1xx6:A (2.0) BS01 ZN 2.7.1.21 GO:0004797 ... Q97F65 N/A
    63032 1xx6:A (2.0) BS02 ADP 2.7.1.21 GO:0004797 ... Q97F65 N/A
    63033 1xx6:B (2.0) BS01 ZN 2.7.1.21 GO:0004797 ... Q97F65 N/A
    63034 1xx6:B (2.0) BS02 ADP 2.7.1.21 GO:0004797 ... Q97F65 N/A
    63035 1xxa:A (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63036 1xxa:A (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63037 1xxa:B (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63038 1xxa:B (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63039 1xxa:C (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63040 1xxa:C (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63041 1xxa:D (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63042 1xxa:D (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63043 1xxa:E (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63044 1xxa:E (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63045 1xxa:F (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63046 1xxa:F (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63047 1xxb:A (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63048 1xxb:A (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63049 1xxb:A (2.6) BS03 ARG ? GO:0003700 ... P0A6D0 8594204
    63050 1xxb:B (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63051 1xxb:B (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63052 1xxb:C (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63053 1xxb:C (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63054 1xxb:D (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63055 1xxb:D (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63056 1xxb:E (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63057 1xxb:E (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63058 1xxb:F (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    63059 1xxb:F (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    63060 1xxe:A (-1.00) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 15667205
    63061 1xxe:A (-1.00) BS02 TUX 3.5.1.108 GO:0006796 ... O67648 15667205 PDBbind: -logKd/Ki=5.41, Ki=3.9uM
    63062 1xxh:B (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63063 1xxh:B (3.45) BS02 AGS 2.7.7.7 GO:0003677 ... P06710 15556993
    63064 1xxh:C (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63065 1xxh:D (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63066 1xxh:D (3.45) BS02 AGS 2.7.7.7 GO:0003677 ... P06710 15556993 PDBbind: -logKd/Ki=6.11, Kd=0.78uM
    63067 1xxh:E (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 15556993
    63068 1xxh:G (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63069 1xxh:G (3.45) BS02 AGS 2.7.7.7 GO:0003677 ... P06710 15556993
    63070 1xxh:H (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63071 1xxh:I (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63072 1xxh:I (3.45) BS02 AGS 2.7.7.7 GO:0003677 ... P06710 15556993
    63073 1xxh:J (3.45) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 15556993
    63074 1xxi:B (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63075 1xxi:B (4.1) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 15556993
    63076 1xxi:C (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63077 1xxi:D (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63078 1xxi:D (4.1) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 15556993 PDBbind: -logKd/Ki=5.52, Kd=3.0uM
    63079 1xxi:E (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 15556993
    63080 1xxi:G (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63081 1xxi:H (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63082 1xxi:I (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 15556993
    63083 1xxi:I (4.1) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 15556993
    63084 1xxi:J (4.1) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 15556993
    63085 1xxj:A (2.8) BS01 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63086 1xxj:A (2.8) BS02 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63087 1xxj:B (2.8) BS01 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63088 1xxj:B (2.8) BS02 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63089 1xxj:C (2.8) BS01 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63090 1xxj:C (2.8) BS02 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63091 1xxj:D (2.8) BS01 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63092 1xxj:D (2.8) BS02 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    63093 1xxm:D (1.9) BS01 CA ? GO:0005515 ... P35804 15618400
    63094 1xxp:A (3.0) BS01 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63095 1xxp:A (3.0) BS02 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63096 1xxp:B (3.0) BS01 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63097 1xxp:B (3.0) BS02 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63098 1xxr:B (2.0) BS01 MAN ? GO:0030246 ... Q8LGR3 16008570
    63099 1xxr:C (2.0) BS01 MAN ? GO:0030246 ... Q8LGR3 16008570
    63100 1xxr:D (2.0) BS01 MAN ? GO:0030246 ... Q8LGR3 16008570
    63101 1xxs:A (1.8) BS01 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63102 1xxs:A (1.8) BS02 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63103 1xxs:A (1.8) BS03 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63104 1xxs:A (1.8) BS04 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63105 1xxs:B (1.8) BS01 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63106 1xxs:B (1.8) BS02 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63107 1xxs:B (1.8) BS03 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63108 1xxs:B (1.8) BS04 STE 3.1.1.4 GO:0004623 ... Q9I834 15760708
    63109 1xxt:A (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    63110 1xxt:B (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    63111 1xxt:C (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    63112 1xxt:D (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    63113 1xxv:A (2.5) BS01 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63114 1xxv:A (2.5) BS02 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63115 1xxv:B (2.5) BS01 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63116 1xxv:B (2.5) BS02 peptide 3.1.3.48 GO:0004725 ... P15273 15720545
    63117 1xxw:A (2.7) BS01 ZN 3.1.1.4 GO:0004623 ... P60043 15735340
    63118 1xxx:A (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63119 1xxx:B (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63120 1xxx:C (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63121 1xxx:D (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63122 1xxx:E (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63123 1xxx:F (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63124 1xxx:G (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63125 1xxx:H (2.28) BS01 MG 4.3.3.7 GO:0005737 ... P9WP25 18062777
    63126 1xy0:A (1.99) BS01 HEM ? GO:0004601 ... P69905 15835899
    63127 1xy0:B (1.99) BS01 HEM ? GO:0004601 ... P68871 15835899
    63128 1xy0:C (1.99) BS01 HEM ? GO:0004601 ... P69905 15835899
    63129 1xy0:D (1.99) BS01 HEM ? GO:0004601 ... P68871 15835899
    63130 1xy3:A (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63131 1xy3:B (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63132 1xy3:C (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63133 1xy3:D (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63134 1xy3:E (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63135 1xy3:F (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63136 1xy3:G (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63137 1xy3:H (3.2) BS01 GUN 1.7.3.3 GO:0004846 ... Q00511 15735331
    63138 1xya:A (1.81) BS01 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63139 1xya:A (1.81) BS02 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63140 1xya:B (1.81) BS01 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63141 1xya:B (1.81) BS02 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63142 1xyb:A (1.96) BS01 GLO 5.3.1.5 GO:0000287 ... P15587 8180169
    63143 1xyb:A (1.96) BS02 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63144 1xyb:A (1.96) BS03 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63145 1xyb:B (1.96) BS01 GLO 5.3.1.5 GO:0000287 ... P15587 8180169
    63146 1xyb:B (1.96) BS02 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63147 1xyb:B (1.96) BS03 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63148 1xyc:A (2.19) BS01 3MF 5.3.1.5 GO:0000287 ... P15587 8180169
    63149 1xyc:A (2.19) BS02 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63150 1xyc:A (2.19) BS03 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63151 1xyc:B (2.19) BS01 3MF 5.3.1.5 GO:0000287 ... P15587 8180169
    63152 1xyc:B (2.19) BS02 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63153 1xyc:B (2.19) BS03 MG 5.3.1.5 GO:0000287 ... P15587 8180169
    63154 1xyd:A (-1.00) BS01 CA ? GO:0001726 ... P04631 15823027
    63155 1xyd:A (-1.00) BS02 CA ? GO:0001726 ... P04631 15823027
    63156 1xyd:A (-1.00) BS03 ZN ? GO:0001726 ... P04631 15823027
    63157 1xyd:A (-1.00) BS04 ZN ? GO:0001726 ... P04631 15823027
    63158 1xyd:B (-1.00) BS01 ZN ? GO:0001726 ... P04631 15823027
    63159 1xyd:B (-1.00) BS02 CA ? GO:0001726 ... P04631 15823027
    63160 1xyd:B (-1.00) BS03 CA ? GO:0001726 ... P04631 15823027
    63161 1xyd:B (-1.00) BS04 ZN ? GO:0001726 ... P04631 15823027
    63162 1xye:A (2.13) BS01 HEM ? GO:0004601 ... P69905 15751957
    63163 1xye:B (2.13) BS01 HEM ? GO:0004601 ... P68871 15751957
    63164 1xye:C (2.13) BS01 HEM ? GO:0004601 ... P69905 15751957
    63165 1xye:D (2.13) BS01 HEM ? GO:0004601 ... P68871 15751957
    63166 1xyi:A (1.45) BS01 dna ? GO:0003677 ... P13123 15653643
    63167 1xyi:A (1.45) BS02 dna ? GO:0003677 ... P13123 15653643
    63168 1xyl:A (1.8) BS01 MG 5.3.1.5 GO:0000287 ... P15587 7906142
    63169 1xyl:B (1.8) BS01 MG 5.3.1.5 GO:0000287 ... P15587 7906142
    63170 1xym:A (1.8) BS01 GLO 5.3.1.5 GO:0000287 ... P15587 7906142
    63171 1xym:A (1.8) BS02 MG 5.3.1.5 GO:0000287 ... P15587 7906142
    63172 1xym:B (1.8) BS01 GLO 5.3.1.5 GO:0000287 ... P15587 7906142
    63173 1xym:B (1.8) BS02 MG 5.3.1.5 GO:0000287 ... P15587 7906142
    63174 1xyn:A (2.0) BS01 CA 3.2.1.8 GO:0004553 ... P36218 7827044
    63175 1xyv:A (1.79) BS01 FMN ? GO:0009055 ... P00323 19118653
    63176 1xyy:A (1.7) BS01 FMN ? GO:0009055 ... P00323 19118653
    63177 1xz0:A (2.8) BS01 JH0 ? N/A P06126 15723809
    63178 1xz0:C (2.8) BS01 JH0 ? N/A P06126 15723809
    63179 1xz1:A (1.75) BS01 HLT ? GO:0005506 ... P02791 15791007 MOAD: Ka~100000M^-1
    63180 1xz2:A (1.9) BS01 HEM ? GO:0004601 ... P69905 15751957
    63181 1xz2:B (1.9) BS01 HEM ? GO:0004601 ... P68871 15751957
    63182 1xz2:C (1.9) BS01 HEM ? GO:0004601 ... P69905 15751957
    63183 1xz2:D (1.9) BS01 HEM ? GO:0004601 ... P68871 15751957
    63184 1xz4:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15751957
    63185 1xz4:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15751957
    63186 1xz4:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15751957
    63187 1xz4:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15751957
    63188 1xz5:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    63189 1xz5:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    63190 1xz5:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    63191 1xz5:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    63192 1xz7:A (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    63193 1xz7:B (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    63194 1xz7:C (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    63195 1xz7:D (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    63196 1xz8:A (2.8) BS01 MG 2.4.2.9 GO:0003723 ... P41007 15716449
    63197 1xz8:A (2.8) BS02 5GP 2.4.2.9 GO:0003723 ... P41007 15716449
    63198 1xz8:A (2.8) BS03 3GP 2.4.2.9 GO:0003723 ... P41007 15716449
    63199 1xz8:B (2.8) BS01 MG 2.4.2.9 GO:0003723 ... P41007 15716449
    63200 1xz8:B (2.8) BS02 U5P 2.4.2.9 GO:0003723 ... P41007 15716449 PDBbind: -logKd/Ki=4.52, Kd=30uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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