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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 1co8:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    6002 1co9:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    6003 1cob:A (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    6004 1cob:A (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    6005 1cob:B (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    6006 1cob:B (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    6007 1coh:A (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    6008 1coh:B (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    6009 1coh:C (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    6010 1coh:D (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    6011 1coj:A (1.9) BS01 FE 1.15.1.1 GO:0004784 ... Q9X6W9 9236127
    6012 1com:A (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6013 1com:A (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6014 1com:B (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6015 1com:B (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6016 1com:C (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6017 1com:C (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6018 1com:D (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6019 1com:D (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6020 1com:E (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6021 1com:E (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6022 1com:F (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6023 1com:F (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6024 1com:G (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6025 1com:G (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6026 1com:H (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6027 1com:I (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6028 1com:J (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6029 1com:K (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    6030 1con:A (2.0) BS01 CD ? GO:0030246 ... P02866 15299493
    6031 1con:A (2.0) BS02 CA ? GO:0030246 ... P02866 15299493
    6032 1con:A (2.0) BS03 CD ? GO:0030246 ... P02866 15299493
    6033 1cor:A (-1.00) BS01 HEC ? GO:0005506 ... P00101 1327105
    6034 1cot:A (1.7) BS01 HEC ? GO:0009055 ... P00096 8179333
    6035 1cow:A (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    6036 1cow:B (3.1) BS01 MG 3.6.1.34 GO:0005515 ... P19483 8692918
    6037 1cow:B (3.1) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    6038 1cow:C (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    6039 1cow:C (3.1) BS02 ADP 3.6.1.34 GO:0005515 ... P19483 8692918
    6040 1cow:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 8692918
    6041 1cow:E (3.1) BS01 AUR 7.1.2.2 GO:0005515 ... P00829 8692918
    6042 1cow:F (3.1) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 8692918
    6043 1cow:F (3.1) BS02 AUR 7.1.2.2 GO:0005515 ... P00829 8692918
    6044 1coy:A (1.8) BS01 AND 1.1.3.6
    5.3.3.1
    GO:0004769 ... P22637 8218217
    6045 1coy:A (1.8) BS02 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P22637 8218217
    6046 1coz:A (2.0) BS01 CTP 2.7.7.39 GO:0003824 ... P27623 10508782
    6047 1coz:B (2.0) BS01 CTP 2.7.7.39 GO:0003824 ... P27623 10508782
    6048 1cp0:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    6049 1cp2:A (1.93) BS01 SF4 1.18.6.1 GO:0005524 ... P00456 9677296
    6050 1cp2:B (1.93) BS01 SF4 1.18.6.1 GO:0005524 ... P00456 9677296
    6051 1cp3:A (2.3) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 9045680
    6052 1cp3:B (2.3) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 9045680
    6053 1cp4:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 2261467
    6054 1cp5:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    6055 1cp6:A (1.9) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 10413478
    6056 1cp6:A (1.9) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 10413478
    6057 1cp6:A (1.9) BS03 BUB 3.4.11.10 GO:0006508 ... Q01693 10413478 MOAD: Ki=10uM
    PDBbind: -logKd/Ki=5.00, Ki=10uM
    6058 1cp7:A (1.58) BS01 ZN 3.4.11.24 GO:0004177 ... P80561 10771423
    6059 1cp7:A (1.58) BS02 ZN 3.4.11.24 GO:0004177 ... P80561 10771423
    6060 1cp7:A (1.58) BS03 CA 3.4.11.24 GO:0004177 ... P80561 10771423
    6061 1cp9:B (2.5) BS01 CA ? GO:0016787 ... Q7WZI9 10548042
    6062 1cpd:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6063 1cpe:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6064 1cpf:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6065 1cpg:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    6066 1cph:B (1.9) BS01 peptide ? GO:0005179 ... P01317 1477273
    6067 1cph:B (1.9) BS02 DCE ? GO:0005179 ... P01317 1477273
    6068 1cpi:A (2.05) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 N/A
    6069 1cpi:B (2.05) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 N/A
    6070 1cpm:A (2.0) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    6071 1cpn:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7937966
    6072 1cpo:A (1.9) BS01 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6073 1cpo:A (1.9) BS02 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6074 1cpo:A (1.9) BS03 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6075 1cpo:A (1.9) BS04 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6076 1cpo:A (1.9) BS05 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6077 1cpo:A (1.9) BS06 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6078 1cpo:A (1.9) BS07 MAN 1.11.1.10 GO:0004601 ... P04963 8747463
    6079 1cpo:A (1.9) BS08 MN 1.11.1.10 GO:0004601 ... P04963 8747463
    6080 1cpo:A (1.9) BS09 HEM 1.11.1.10 GO:0004601 ... P04963 8747463
    6081 1cpq:A (1.72) BS01 HEM ? GO:0005506 ... P00147 8676382
    6082 1cpr:A (2.1) BS01 ZN ? GO:0005506 ... P00147 15299853
    6083 1cpr:A (2.1) BS02 HEM ? GO:0005506 ... P00147 15299853
    6084 1cps:A (2.25) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 1527041
    6085 1cps:A (2.25) BS02 CPM 3.4.17.1 GO:0004181 ... P00730 1527041 MOAD: Ki=0.22uM
    PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    6086 1cpt:A (2.3) BS01 HEM 1.14.-.- GO:0004497 ... P33006 8120894
    6087 1cpu:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    6088 1cpu:A (2.0) BS02 AGL 3.2.1.1 GO:0003824 ... P04746 10769135
    6089 1cpu:A (2.0) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    6090 1cpu:A (2.0) BS04 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    6091 1cpu:A (2.0) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10769135
    6092 1cpu:A (2.0) BS06 HMC 3.2.1.1 GO:0003824 ... P04746 10769135
    6093 1cpw:A (2.2) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    6094 1cpx:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 9843422
    6095 1cq1:A (1.9) BS01 BGC 1.1.5.2 GO:0008876 ... P13650 10508152
    6096 1cq1:A (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6097 1cq1:A (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6098 1cq1:A (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6099 1cq1:A (1.9) BS05 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    6100 1cq1:B (1.9) BS01 BGC 1.1.5.2 GO:0008876 ... P13650 10508152
    6101 1cq1:B (1.9) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6102 1cq1:B (1.9) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6103 1cq1:B (1.9) BS04 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    6104 1cq1:B (1.9) BS05 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    6105 1cq2:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10725379
    6106 1cq4:A (1.8) BS01 peptide ? GO:0004867 ... P01053 9990011
    6107 1cq6:A (2.7) BS01 PY4 2.6.1.1 GO:0003824 ... P00509 10858450
    6108 1cq7:A (2.4) BS01 PY5 2.6.1.1 GO:0003824 ... P00509 10858450
    6109 1cq8:A (2.4) BS01 PY6 2.6.1.1 GO:0003824 ... P00509 10858450
    6110 1cq9:A (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6111 1cq9:A (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6112 1cq9:B (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6113 1cq9:B (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6114 1cq9:C (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6115 1cq9:C (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6116 1cq9:D (3.5) BS01 CA ? GO:0030246 ... P02872 11288176
    6117 1cq9:D (3.5) BS02 MN ? GO:0030246 ... P02872 11288176
    6118 1cqe:A (3.1) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 8121489
    6119 1cqe:A (3.1) BS02 FLP 1.14.99.1 GO:0004601 ... P05979 8121489 BindingDB: IC50=150nM, Ki=1000nM
    6120 1cqe:B (3.1) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 8121489
    6121 1cqe:B (3.1) BS02 FLP 1.14.99.1 GO:0004601 ... P05979 8121489 BindingDB: IC50=150nM, Ki=1000nM
    6122 1cqf:A (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6123 1cqf:A (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6124 1cqf:B (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6125 1cqf:B (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6126 1cqf:B (2.2) BS03 GAL ? GO:0005576 ... P69179 N/A
    6127 1cqf:B (2.2) BS04 GLA ? GO:0005576 ... P69179 N/A
    6128 1cqf:C (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6129 1cqf:C (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6130 1cqf:D (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6131 1cqf:D (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6132 1cqf:E (2.2) BS01 GLA ? GO:0005576 ... P69179 N/A
    6133 1cqf:E (2.2) BS02 GLA ? GO:0005576 ... P69179 N/A
    6134 1cqg:A (-1.00) BS01 peptide ? GO:0000122 ... P10599 8736558
    6135 1cqh:A (-1.00) BS01 peptide ? GO:0000122 ... P10599 8736558
    6136 1cqi:A (3.3) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6137 1cqi:A (3.3) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6138 1cqi:B (3.3) BS01 MG 6.2.1.5 GO:0000287 ... P0A836 10625475
    6139 1cqi:B (3.3) BS02 ADP 6.2.1.5 GO:0000287 ... P0A836 10625475
    6140 1cqi:B (3.3) BS03 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6141 1cqi:D (3.3) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6142 1cqi:D (3.3) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6143 1cqi:E (3.3) BS01 MG 6.2.1.5 GO:0000287 ... P0A836 10625475
    6144 1cqi:E (3.3) BS02 ADP 6.2.1.5 GO:0000287 ... P0A836 10625475
    6145 1cqj:A (2.9) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6146 1cqj:A (2.9) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6147 1cqj:B (2.9) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6148 1cqj:B (2.9) BS02 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6149 1cqj:D (2.9) BS01 PO4 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6150 1cqj:D (2.9) BS02 COA 6.2.1.5 GO:0000166 ... P0AGE9 10625475
    6151 1cqj:E (2.9) BS01 COA 6.2.1.5 GO:0000287 ... P0A836 10625475
    6152 1cqp:A (2.6) BS01 MG ? N/A P20701 10493852
    6153 1cqp:A (2.6) BS02 803 ? N/A P20701 10493852 PDBbind: -logKd/Ki=5.62, IC50=2.4uM
    BindingDB: Kd=12900nM, IC50=2400nM
    6154 1cqp:A (2.6) BS03 803 ? N/A P20701 10493852 PDBbind: -logKd/Ki=5.62, IC50=2.4uM
    BindingDB: Kd=12900nM, IC50=2400nM
    6155 1cqp:B (2.6) BS01 803 ? N/A P20701 10493852 BindingDB: Kd=12900nM, IC50=2400nM
    6156 1cqp:B (2.6) BS02 MG ? N/A P20701 10493852
    6157 1cqp:B (2.6) BS03 803 ? N/A P20701 10493852 BindingDB: Kd=12900nM, IC50=2400nM
    6158 1cqq:A (1.85) BS01 AG7 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... P04936 10500114
    6159 1cqr:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6160 1cqr:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6161 1cqr:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6162 1cqr:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6163 1cqr:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6164 1cqr:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6165 1cqr:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    6166 1cqr:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6167 1cqr:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6168 1cqr:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    6169 1cqs:A (1.9) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 10653633
    6170 1cqs:B (1.9) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 10653633
    6171 1cqt:A (3.2) BS01 dna ? GO:0000981 ... P14859 10541551
    6172 1cqt:A (3.2) BS02 dna ? GO:0000981 ... P14859 10541551
    6173 1cqt:A (3.2) BS03 peptide ? GO:0000981 ... P14859 10541551
    6174 1cqt:B (3.2) BS01 dna ? GO:0000981 ... P14859 10541551
    6175 1cqt:B (3.2) BS02 dna ? GO:0000981 ... P14859 10541551
    6176 1cqt:B (3.2) BS03 peptide ? GO:0000981 ... P14859 10541551
    6177 1cqv:A (2.06) BS01 ZN ? GO:0005576 ... P34071 11526318
    6178 1cqw:A (1.5) BS01 IOD 3.8.1.5 GO:0003824 ... P59336 10587433
    6179 1cqw:A (1.5) BS02 IOD 3.8.1.5 GO:0003824 ... P59336 10587433
    6180 1cqx:A (1.75) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 8557026
    6181 1cqx:A (1.75) BS02 FAD 1.14.12.17 GO:0005344 ... P39662 8557026
    6182 1cqx:B (1.75) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 8557026
    6183 1cqx:B (1.75) BS02 FAD 1.14.12.17 GO:0005344 ... P39662 8557026
    6184 1cr1:A (2.3) BS01 TTP 2.7.7.-
    3.6.4.12
    GO:0003678 ... P03692 10535735
    6185 1cr2:A (2.3) BS01 DTP 2.7.7.-
    3.6.4.12
    GO:0003678 ... P03692 10535735
    6186 1cr4:A (2.5) BS01 TYD 2.7.7.-
    3.6.4.12
    GO:0003678 ... P03692 10535735
    6187 1cr5:A (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    6188 1cr5:A (2.3) BS02 NEN ? GO:0016887 ... P18759 10611286
    6189 1cr5:B (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    6190 1cr5:C (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    6191 1cr5:C (2.3) BS02 NEN ? GO:0016887 ... P18759 10611286
    6192 1cr6:A (2.8) BS01 CPU 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34914 10485878 PDBbind: -logKd/Ki=8.51, Ki=3.1nM
    6193 1cr6:B (2.8) BS01 CPU 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34914 10485878
    6194 1cr7:A (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    6195 1cr7:A (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    6196 1cr7:A (2.6) BS03 CA ? GO:0030246 ... P02872 11288176
    6197 1cr7:A (2.6) BS04 MN ? GO:0030246 ... P02872 11288176
    6198 1cr7:B (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    6199 1cr7:B (2.6) BS02 GAL ? GO:0030246 ... P02872 11288176
    6200 1cr7:B (2.6) BS03 CA ? GO:0030246 ... P02872 11288176

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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