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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    61401 1xdq:D (2.55) BS01 O 1.8.5.- GO:0016491 ... P76342 15355966
    61402 1xdq:E (2.55) BS01 O 1.8.5.- GO:0016491 ... P76342 15355966
    61403 1xds:A (2.3) BS01 SAM 4.1.1.- GO:0008168 ... Q54527 15548527
    61404 1xds:A (2.3) BS02 DRA 4.1.1.- GO:0008168 ... Q54527 15548527
    61405 1xds:B (2.3) BS01 SAM 4.1.1.- GO:0008168 ... Q54527 15548527
    61406 1xds:B (2.3) BS02 DRA 4.1.1.- GO:0008168 ... Q54527 15548527
    61407 1xdu:A (2.7) BS01 SFG 4.1.1.- GO:0008168 ... Q54527 15548527
    61408 1xe4:A (1.95) BS01 MG 2.3.2.10 GO:0008360 ... Q9EY50 15901708
    61409 1xe5:A (2.4) BS01 5FE 3.4.23.39 GO:0004190 ... P46925 N/A
    61410 1xe5:B (2.4) BS01 5FE 3.4.23.39 GO:0004190 ... P46925 N/A
    61411 1xe6:A (2.8) BS01 5FP 3.4.23.39 GO:0004190 ... P46925 N/A
    61412 1xe6:B (2.8) BS01 5FP 3.4.23.39 GO:0004190 ... P46925 N/A
    61413 1xe8:A (2.8) BS01 ADE ? GO:0003674 ... Q03629 15608122
    61414 1xed:A (1.9) BS01 MG ? N/A P01833 15530357
    61415 1xed:B (1.9) BS01 MG ? N/A P01833 15530357
    61416 1xef:A (2.5) BS01 ATP ? GO:0005524 ... P08716 15889153
    61417 1xef:A (2.5) BS02 ATP ? GO:0005524 ... P08716 15889153
    61418 1xef:B (2.5) BS01 ATP ? GO:0005524 ... P08716 15889153
    61419 1xef:B (2.5) BS02 ATP ? GO:0005524 ... P08716 15889153
    61420 1xef:C (2.5) BS01 ATP ? GO:0005524 ... P08716 15889153
    61421 1xef:C (2.5) BS02 ATP ? GO:0005524 ... P08716 15889153
    61422 1xef:D (2.5) BS01 ATP ? GO:0005524 ... P08716 15889153
    61423 1xef:D (2.5) BS02 ATP ? GO:0005524 ... P08716 15889153
    61424 1xeg:A (1.81) BS01 ACT 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 18323598
    61425 1xeg:A (1.81) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 18323598
    61426 1xel:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 8611497
    61427 1xel:A (1.8) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 8611497
    61428 1xem:A (1.76) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 15796505
    61429 1xen:A (1.85) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 15796505
    61430 1xeo:A (1.3) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 15796505
    61431 1xep:A (1.55) BS01 CAQ 3.2.1.17 GO:0003796 ... P00720 15916423
    61432 1xer:A (2.0) BS01 ZN ? GO:0008270 ... P55907 8836097
    61433 1xer:A (2.0) BS02 F3S ? GO:0008270 ... P55907 8836097
    61434 1xer:A (2.0) BS03 F3S ? GO:0008270 ... P55907 8836097
    61435 1xes:A (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    61436 1xes:B (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    61437 1xes:C (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    61438 1xes:D (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    61439 1xet:B (2.0) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    61440 1xet:C (2.0) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    61441 1xet:D (2.0) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    61442 1xet:D (2.0) BS02 MCA 2.3.1.146 GO:0005737 ... Q02323 N/A
    61443 1xev:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    61444 1xev:B (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    61445 1xev:C (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    61446 1xev:D (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    61447 1xex:A (2.5) BS01 MG ? N/A Q8TZY2 15458651
    61448 1xex:A (2.5) BS02 ATP ? N/A Q8TZY2 15458651
    61449 1xey:A (2.05) BS01 PLP 4.1.1.15 GO:0004351 ... P69908 15735332
    61450 1xey:A (2.05) BS02 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    61451 1xey:A (2.05) BS03 PLP 4.1.1.15 GO:0004351 ... P69908 15735332
    61452 1xey:A (2.05) BS04 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    61453 1xey:B (2.05) BS01 PLP 4.1.1.15 GO:0004351 ... P69908 15735332
    61454 1xey:B (2.05) BS02 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    61455 1xey:B (2.05) BS03 PLP 4.1.1.15 GO:0004351 ... P69908 15735332
    61456 1xey:B (2.05) BS04 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    61457 1xez:A (2.3) BS01 BOG ? GO:0005576 ... P09545 15978620
    61458 1xf0:A (2.0) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 15087468
    61459 1xf0:A (2.0) BS02 ASD 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 15087468
    61460 1xf1:A (1.9) BS01 CA 3.4.21.110 GO:0004252 ... P15926 16344483
    61461 1xf1:B (1.9) BS01 CA 3.4.21.110 GO:0004252 ... P15926 16344483
    61462 1xf2:H (2.3) BS01 dna N/A N/A N/A 15784256
    61463 1xf2:L (2.3) BS01 dna N/A N/A N/A 15784256
    61464 1xf5:A (2.6) BS01 peptide N/A N/A N/A 15930632
    61465 1xf5:B (2.6) BS01 peptide N/A N/A N/A 15930632
    61466 1xf5:C (2.6) BS01 peptide N/A N/A N/A 15930632
    61467 1xf5:D (2.6) BS01 peptide N/A N/A N/A 15930632
    61468 1xf6:A (1.1) BS01 DBV ? GO:0030089 ... Q00433 15504407
    61469 1xf6:A (1.1) BS02 PEB ? GO:0030089 ... Q00433 15504407
    61470 1xf6:A (1.1) BS03 PEB ? GO:0030089 ... Q00433 15504407
    61471 1xf6:A (1.1) BS04 PEB ? GO:0030089 ... Q00433 15504407
    61472 1xf6:B (1.1) BS01 DBV ? GO:0030089 ... P30943 15504407
    61473 1xf6:B (1.1) BS02 DBV ? GO:0030089 ... P30943 15504407
    61474 1xf6:B (1.1) BS03 PEB ? GO:0030089 ... P30943 15504407
    61475 1xf6:B (1.1) BS04 PEB ? GO:0030089 ... P30943 15504407
    61476 1xf6:C (1.1) BS01 PEB ? GO:0009507 ... P27198 15504407
    61477 1xf6:C (1.1) BS02 PEB ? GO:0009507 ... P27198 15504407
    61478 1xf6:C (1.1) BS03 PEB ? GO:0009507 ... P27198 15504407
    61479 1xf6:D (1.1) BS01 DBV ? GO:0009507 ... P27198 15504407
    61480 1xf6:D (1.1) BS02 PEB ? GO:0009507 ... P27198 15504407
    61481 1xf6:D (1.1) BS03 PEB ? GO:0009507 ... P27198 15504407
    61482 1xf6:D (1.1) BS04 PEB ? GO:0009507 ... P27198 15504407
    61483 1xf8:A (1.9) BS01 MG 2.3.2.10 GO:0008360 ... Q9EY50 15901708
    61484 1xf9:A (2.7) BS01 ATP 5.6.1.6 GO:0005524 ... P26361 15619636
    61485 1xf9:B (2.7) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    61486 1xf9:B (2.7) BS02 ATP 5.6.1.6 GO:0005524 ... P26361 15619636
    61487 1xf9:C (2.7) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    61488 1xf9:C (2.7) BS02 ATP 5.6.1.6 GO:0005524 ... P26361 15619636
    61489 1xf9:D (2.7) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    61490 1xf9:D (2.7) BS02 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    61491 1xf9:D (2.7) BS03 ATP 5.6.1.6 GO:0005524 ... P26361 15619636
    61492 1xfa:A (3.1) BS01 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    61493 1xfa:A (3.1) BS02 ATP 5.6.1.6 GO:0005524 ... P26361 15619636
    61494 1xfa:B (3.1) BS01 ATP 5.6.1.6 GO:0005524 ... P26361 15619636
    61495 1xfa:B (3.1) BS02 MG 5.6.1.6 GO:0005524 ... P26361 15619636
    61496 1xfa:B (3.1) BS03 ATP 5.6.1.6 GO:0005524 ... P26361 15619636
    61497 1xfc:A (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P9WQA9 15683232
    61498 1xfc:B (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P9WQA9 15683232
    61499 1xfe:A (-1.00) BS01 CA ? GO:0005509 ... P01130 15494314
    61500 1xfe:A (-1.00) BS02 CA ? GO:0005509 ... P01130 15494314
    61501 1xff:A (1.8) BS01 GLU 2.6.1.16 N/A P17169 8805567 MOAD: Ki=15uM
    PDBbind: -logKd/Ki=4.82, Ki=15uM
    61502 1xff:B (1.8) BS01 GLU 2.6.1.16 N/A P17169 8805567 MOAD: Ki=15uM
    61503 1xfg:A (1.85) BS01 HGA 2.6.1.16 N/A P17169 8805567
    61504 1xfg:B (1.85) BS01 HGA 2.6.1.16 N/A P17169 8805567
    61505 1xfi:A (1.7) BS01 MG 3.1.3.- GO:0004594 ... Q949P3 16511115
    61506 1xfo:A (1.96) BS01 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61507 1xfo:A (1.96) BS02 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61508 1xfo:B (1.96) BS01 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61509 1xfo:B (1.96) BS02 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61510 1xfo:C (1.96) BS01 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61511 1xfo:C (1.96) BS02 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61512 1xfo:D (1.96) BS01 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61513 1xfo:D (1.96) BS02 ZN 3.4.11.- GO:0004177 ... O59196 15375159
    61514 1xfu:A (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61515 1xfu:B (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61516 1xfu:C (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61517 1xfu:D (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61518 1xfu:E (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61519 1xfu:F (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61520 1xfu:O (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61521 1xfu:O (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61522 1xfu:O (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61523 1xfu:P (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61524 1xfu:P (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61525 1xfu:P (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61526 1xfu:Q (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61527 1xfu:Q (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61528 1xfu:Q (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61529 1xfu:R (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61530 1xfu:R (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61531 1xfu:R (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61532 1xfu:S (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61533 1xfu:S (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61534 1xfu:S (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61535 1xfu:T (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61536 1xfu:T (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61537 1xfu:T (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61538 1xfv:A (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61539 1xfv:A (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022 PDBbind: -logKd/Ki=3.89, Kd=130uM
    61540 1xfv:B (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61541 1xfv:B (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    61542 1xfv:C (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61543 1xfv:C (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    61544 1xfv:D (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61545 1xfv:D (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    61546 1xfv:E (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61547 1xfv:E (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    61548 1xfv:F (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61549 1xfv:F (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    61550 1xfv:O (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61551 1xfv:O (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61552 1xfv:O (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61553 1xfv:P (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61554 1xfv:P (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61555 1xfv:P (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61556 1xfv:Q (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61557 1xfv:Q (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61558 1xfv:Q (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61559 1xfv:R (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61560 1xfv:R (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61561 1xfv:R (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61562 1xfv:S (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61563 1xfv:S (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61564 1xfv:S (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61565 1xfv:T (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61566 1xfv:T (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61567 1xfv:T (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61568 1xfw:A (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61569 1xfw:A (3.4) BS02 CMP 4.6.1.1 GO:0003824 ... P40136 15719022
    61570 1xfw:B (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61571 1xfw:B (3.4) BS02 CMP 4.6.1.1 GO:0003824 ... P40136 15719022
    61572 1xfw:C (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61573 1xfw:C (3.4) BS02 CMP 4.6.1.1 GO:0003824 ... P40136 15719022
    61574 1xfw:D (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61575 1xfw:D (3.4) BS02 CMP 4.6.1.1 GO:0003824 ... P40136 15719022
    61576 1xfw:E (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61577 1xfw:E (3.4) BS02 CMP 4.6.1.1 GO:0003824 ... P40136 15719022
    61578 1xfw:F (3.4) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61579 1xfw:F (3.4) BS02 CMP 4.6.1.1 GO:0003824 ... P40136 15719022
    61580 1xfw:O (3.4) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61581 1xfw:O (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61582 1xfw:O (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61583 1xfw:P (3.4) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61584 1xfw:P (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61585 1xfw:P (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61586 1xfw:Q (3.4) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61587 1xfw:Q (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61588 1xfw:Q (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61589 1xfw:R (3.4) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61590 1xfw:R (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61591 1xfw:R (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61592 1xfw:S (3.4) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61593 1xfw:S (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61594 1xfw:S (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61595 1xfw:T (3.4) BS01 CA ? GO:0000086 ... P0DP23 15719022
    61596 1xfw:T (3.4) BS02 CA ? GO:0000086 ... P0DP23 15719022
    61597 1xfw:T (3.4) BS03 CA ? GO:0000086 ... P0DP23 15719022
    61598 1xfx:A (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61599 1xfx:B (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    61600 1xfx:C (3.2) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218