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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5601 1cgx:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5602 1cgy:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5603 1cgy:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5604 1cgy:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5605 1cgy:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5606 1cgy:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5607 1cgy:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5608 1cgy:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5609 1cgy:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5610 1cgz:A (1.7) BS01 STL 2.3.1.74 GO:0009058 ... P30074 10426957
    5611 1ch0:A (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600381
    5612 1ch0:C (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600381
    5613 1ch1:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5614 1ch2:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5615 1ch3:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5616 1ch4:A (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5617 1ch4:B (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5618 1ch4:C (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5619 1ch4:D (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5620 1ch5:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5621 1ch7:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5622 1ch8:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5623 1ch8:A (2.5) BS02 GPX 6.3.4.4 GO:0000166 ... P0A7D4 10364182 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    5624 1ch8:A (2.5) BS03 HDA 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5625 1ch8:A (2.5) BS04 IMP 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5626 1ch9:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5627 1chc:A (-1.00) BS01 ZN 2.3.2.27 GO:0046872 ... P28990 8126734
    5628 1chc:A (-1.00) BS02 ZN 2.3.2.27 GO:0046872 ... P28990 8126734
    5629 1chh:A (1.97) BS01 HEC ? GO:0005515 ... P00044 7819192
    5630 1chi:A (2.0) BS01 HEC ? GO:0005515 ... P00044 7819192
    5631 1chj:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7819192
    5632 1chm:A (1.9) BS01 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5633 1chm:A (1.9) BS02 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5634 1chm:B (1.9) BS01 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5635 1chm:B (1.9) BS02 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5636 1chn:A (1.76) BS01 MG ? GO:0000156 ... P0AE67 8176739
    5637 1cho:F (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 3477645
    5638 1cho:G (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 3477645
    5639 1chw:A (1.9) BS01 HXC 2.3.1.74 GO:0009058 ... P30074 10426957
    5640 1chw:B (1.9) BS01 HXC 2.3.1.74 GO:0009058 ... P30074 10426957
    5641 1ci0:A (2.7) BS01 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5642 1ci0:A (2.7) BS02 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5643 1ci0:B (2.7) BS01 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5644 1ci0:B (2.7) BS02 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5645 1ci1:B (2.0) BS01 HEX 5.3.1.1 GO:0004807 ... P52270 10468562
    5646 1ci3:M (1.9) BS01 ZN ? GO:0005506 ... P95522 10423236
    5647 1ci3:M (1.9) BS02 HEC ? GO:0005506 ... P95522 10423236
    5648 1ci7:A (2.6) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 10529228
    5649 1ci7:A (2.6) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 10529228
    5650 1ci7:B (2.6) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 10529228
    5651 1ci7:B (2.6) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 10529228
    5652 1ci9:A (1.8) BS01 DFP 3.1.1.- GO:0005737 ... Q9KX40 11847270
    5653 1ci9:B (1.8) BS01 DFP 3.1.1.- GO:0005737 ... Q9KX40 11847270
    5654 1cia:A (2.5) BS01 CO 2.3.1.28 GO:0008811 ... P00484 7906544
    5655 1cib:A (2.3) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5656 1cib:A (2.3) BS02 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5657 1cib:A (2.3) BS03 HDA 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5658 1cib:A (2.3) BS04 IMP 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5659 1cie:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    5660 1cif:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7711047
    5661 1cig:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    5662 1cih:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    5663 1cij:A (2.3) BS01 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    5664 1cij:A (2.3) BS02 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    5665 1cij:A (2.3) BS03 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    5666 1cik:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5667 1cil:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    5668 1cil:A (1.6) BS02 ETS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888 MOAD: Ki=0.372nM
    PDBbind: -logKd/Ki=9.43, Ki=0.37nM
    BindingDB: Ki=9nM, IC50=26.61nM, Kd=0.043000nM
    5669 1cim:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    5670 1cim:A (2.1) BS02 PTS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888 MOAD: Ki=1.52nM
    PDBbind: -logKd/Ki=8.82, Ki=1.52nM
    BindingDB: Ki=1.5nM
    5671 1cin:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    5672 1cin:A (2.1) BS02 MTS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888 MOAD: Ki=1.88nM
    PDBbind: -logKd/Ki=8.73, Ki=1.88nM
    BindingDB: Ki=1.9nM
    5673 1cio:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5674 1cip:A (1.5) BS01 MG ? GO:0000287 ... P10824 10358003
    5675 1cip:A (1.5) BS02 GNP ? GO:0000287 ... P10824 10358003
    5676 1ciq:A (2.2) BS01 peptide ? GO:0004867 ... P01053 9079381
    5677 1cir:A (-1.00) BS01 peptide ? GO:0004867 ... P01053 9079381
    5678 1cit:A (2.7) BS01 dna ? GO:0003700 ... P22829 10331876 PDBbind: Kd=1nM
    5679 1cit:A (2.7) BS02 dna ? GO:0003700 ... P22829 10331876 PDBbind: Kd=1nM
    5680 1cit:A (2.7) BS03 ZN ? GO:0003700 ... P22829 10331876
    5681 1cit:A (2.7) BS04 ZN ? GO:0003700 ... P22829 10331876
    5682 1ciu:A (2.3) BS01 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    5683 1ciu:A (2.3) BS02 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    5684 1civ:A (2.8) BS01 NAP 1.1.1.82 GO:0003824 ... P46489 10196131
    5685 1ciw:A (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5686 1ciw:A (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5687 1ciw:A (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5688 1ciw:B (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5689 1ciw:B (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5690 1ciw:B (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5691 1ciw:C (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5692 1ciw:C (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5693 1ciw:C (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5694 1ciw:D (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5695 1ciw:D (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5696 1ciw:D (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5697 1ciz:A (1.64) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    5698 1ciz:A (1.64) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    5699 1ciz:A (1.64) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    5700 1ciz:A (1.64) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    5701 1ciz:A (1.64) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    5702 1ciz:A (1.64) BS06 DPS 3.4.24.17 GO:0004222 ... P08254 10422833 MOAD: Ki=36nM
    PDBbind: -logKd/Ki=7.44, Ki=36nM
    5703 1cj0:A (2.8) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5704 1cj0:A (2.8) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5705 1cj0:B (2.8) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5706 1cj0:B (2.8) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5707 1cj1:A (3.0) BS01 C78 ? N/A P62993 10395476 PDBbind: -logKd/Ki=8.80, IC50=1.6nM
    5708 1cj1:B (3.0) BS01 C78 ? N/A P62993 10395476
    5709 1cj1:C (3.0) BS01 C78 ? N/A P62993 10395476
    5710 1cj1:D (3.0) BS01 C78 ? N/A P62993 10395476
    5711 1cj1:E (3.0) BS01 C78 ? N/A P62993 10395476
    5712 1cj1:F (3.0) BS01 C78 ? N/A P62993 10395476
    5713 1cj1:G (3.0) BS01 C78 ? N/A P62993 10395476
    5714 1cj1:H (3.0) BS01 C78 ? N/A P62993 10395476
    5715 1cj1:I (3.0) BS01 C78 ? N/A P62993 10395476
    5716 1cj1:J (3.0) BS01 C78 ? N/A P62993 10395476
    5717 1cj1:K (3.0) BS01 C78 ? N/A P62993 10395476
    5718 1cj1:L (3.0) BS01 C78 ? N/A P62993 10395476
    5719 1cj2:A (2.8) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 10493859
    5720 1cj3:A (2.5) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 10493859
    5721 1cj4:A (2.4) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 10493859
    5722 1cja:A (2.9) BS01 AMP 2.7.11.1 N/A P80197 10357805
    5723 1cja:B (2.9) BS01 AMP 2.7.11.1 N/A P80197 10357805
    5724 1cjb:A (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5725 1cjb:A (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5726 1cjb:B (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5727 1cjb:B (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5728 1cjb:C (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5729 1cjb:C (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5730 1cjb:D (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5731 1cjb:D (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5732 1cjc:A (1.7) BS01 FAD 1.18.1.6 GO:0005515 ... P08165 10369776
    5733 1cje:A (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5734 1cje:B (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5735 1cje:C (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5736 1cje:D (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5737 1cjf:A (2.3) BS01 peptide ? GO:0000774 ... P07737 10404225
    5738 1cjf:B (2.3) BS01 peptide ? GO:0000774 ... P07737 10404225
    5739 1cjf:B (2.3) BS02 peptide ? GO:0000774 ... P07737 10404225
    5740 1cjg:A (-1.00) BS01 dna ? GO:0003677 ... P03023 10647179
    5741 1cjg:A (-1.00) BS02 dna ? GO:0003677 ... P03023 10647179
    5742 1cjg:B (-1.00) BS01 dna ? GO:0003677 ... P03023 10647179
    5743 1cjg:B (-1.00) BS02 dna ? GO:0003677 ... P03023 10647179
    5744 1cjk:A (3.0) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5745 1cjk:A (3.0) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    5746 1cjk:A (3.0) BS03 TAT 4.6.1.1 GO:0009190 ... P30803 10427002
    5747 1cjk:B (3.0) BS01 TAT 4.6.1.1 GO:0009190 ... P26769 10427002
    5748 1cjk:C (3.0) BS01 MG ? GO:0003924 ... P04896 10427002
    5749 1cjk:C (3.0) BS02 GSP ? GO:0003924 ... P04896 10427002
    5750 1cjp:A (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5751 1cjp:A (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5752 1cjp:A (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5753 1cjp:B (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5754 1cjp:B (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5755 1cjp:B (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5756 1cjp:C (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5757 1cjp:C (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5758 1cjp:C (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5759 1cjp:D (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5760 1cjp:D (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5761 1cjp:D (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5762 1cjq:B (3.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 10409822
    5763 1cjr:B (2.3) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 10409822
    5764 1cjt:A (2.8) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5765 1cjt:A (2.8) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    5766 1cjt:A (2.8) BS03 FOK 4.6.1.1 GO:0009190 ... P30803 10427002
    5767 1cjt:A (2.8) BS04 DAD 4.6.1.1 GO:0009190 ... P30803 10427002
    5768 1cjt:B (2.8) BS01 FOK 4.6.1.1 GO:0009190 ... P26769 10427002
    5769 1cjt:B (2.8) BS02 DAD 4.6.1.1 GO:0009190 ... P26769 10427002
    5770 1cjt:C (2.8) BS01 MG ? GO:0003924 ... P04896 10427002
    5771 1cjt:C (2.8) BS02 GSP ? GO:0003924 ... P04896 10427002
    5772 1cju:A (2.8) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5773 1cju:A (2.8) BS02 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5774 1cju:A (2.8) BS03 FOK 4.6.1.1 GO:0009190 ... P30803 10427002
    5775 1cju:A (2.8) BS04 DAD 4.6.1.1 GO:0009190 ... P30803 10427002
    5776 1cju:B (2.8) BS01 DAD 4.6.1.1 GO:0009190 ... P26769 10427002
    5777 1cju:C (2.8) BS01 MG ? GO:0003924 ... P04896 10427002
    5778 1cju:C (2.8) BS02 GSP ? GO:0003924 ... P04896 10427002
    5779 1cjv:A (3.0) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5780 1cjv:A (3.0) BS02 FOK 4.6.1.1 GO:0009190 ... P30803 10427002
    5781 1cjv:A (3.0) BS03 DAD 4.6.1.1 GO:0009190 ... P30803 10427002
    5782 1cjv:B (3.0) BS01 DAD 4.6.1.1 GO:0009190 ... P26769 10427002
    5783 1cjv:C (3.0) BS01 MG ? GO:0003924 ... P04896 10427002
    5784 1cjv:C (3.0) BS02 ZN ? GO:0003924 ... P04896 10427002
    5785 1cjv:C (3.0) BS03 GSP ? GO:0003924 ... P04896 10427002
    5786 1cjw:A (1.8) BS01 COT 2.3.1.87 GO:0016747 ... Q29495 10319816
    5787 1cjx:A (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5788 1cjx:A (2.4) BS02 ACT 1.13.11.27 GO:0003868 ... P80064 10467142
    5789 1cjx:B (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5790 1cjx:B (2.4) BS02 ACT 1.13.11.27 GO:0003868 ... P80064 10467142
    5791 1cjx:C (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5792 1cjx:D (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5793 1cjx:D (2.4) BS02 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5794 1cjy:A (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5795 1cjy:A (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5796 1cjy:B (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5797 1cjy:B (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5798 1ck1:A (2.6) BS01 ZN ? GO:0005576 ... Q06535 11934896
    5799 1ck6:A (1.9) BS01 BMA 1.11.1.7 GO:0000302 ... P28313 10504224
    5800 1ck6:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10504224

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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