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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    57401 1vy4:B7 (2.6) BS04 MG ? GO:0003735 ... P80340 25132179
    57402 1vy4:B8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    57403 1vy4:B8 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    57404 1vy4:B9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    57405 1vy4:B9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    57406 1vy4:BD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    57407 1vy4:BD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    57408 1vy4:BD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    57409 1vy4:BD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    57410 1vy4:BD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    57411 1vy4:BD (2.6) BS06 MG ? GO:0002181 ... P60405 25132179
    57412 1vy4:BD (2.6) BS07 MG ? GO:0002181 ... P60405 25132179
    57413 1vy4:BD (2.6) BS08 MG ? GO:0002181 ... P60405 25132179
    57414 1vy4:BD (2.6) BS09 MG ? GO:0002181 ... P60405 25132179
    57415 1vy4:BD (2.6) BS10 MG ? GO:0002181 ... P60405 25132179
    57416 1vy4:BD (2.6) BS11 MG ? GO:0002181 ... P60405 25132179
    57417 1vy4:BD (2.6) BS12 MG ? GO:0002181 ... P60405 25132179
    57418 1vy4:BD (2.6) BS13 MG ? GO:0002181 ... P60405 25132179
    57419 1vy4:BE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    57420 1vy4:BE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    57421 1vy4:BF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    57422 1vy4:BF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    57423 1vy4:BF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    57424 1vy4:BF (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    57425 1vy4:BF (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    57426 1vy4:BF (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    57427 1vy4:BF (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    57428 1vy4:BF (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    57429 1vy4:BF (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    57430 1vy4:BG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    57431 1vy4:BG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    57432 1vy4:BG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    57433 1vy4:BG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    57434 1vy4:BG (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    57435 1vy4:BH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    57436 1vy4:BH (2.6) BS02 MG ? GO:0002181 ... P0DOY8 25132179
    57437 1vy4:BI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    57438 1vy4:BN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    57439 1vy4:BN (2.6) BS02 MG ? GO:0003729 ... P60488 25132179
    57440 1vy4:BO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    57441 1vy4:BO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    57442 1vy4:BP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    57443 1vy4:BP (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    57444 1vy4:BP (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    57445 1vy4:BQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    57446 1vy4:BQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    57447 1vy4:BQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    57448 1vy4:BQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    57449 1vy4:BQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    57450 1vy4:BR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    57451 1vy4:BR (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    57452 1vy4:BR (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    57453 1vy4:BS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    57454 1vy4:BS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    57455 1vy4:BT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    57456 1vy4:BT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    57457 1vy4:BU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    57458 1vy4:BU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    57459 1vy4:BU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    57460 1vy4:BU (2.6) BS04 MG ? GO:0000027 ... P60491 25132179
    57461 1vy4:BU (2.6) BS05 MG ? GO:0000027 ... P60491 25132179
    57462 1vy4:BU (2.6) BS06 MG ? GO:0000027 ... P60491 25132179
    57463 1vy4:BV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    57464 1vy4:BV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    57465 1vy4:BV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    57466 1vy4:BV (2.6) BS04 MG ? GO:0003723 ... P60492 25132179
    57467 1vy4:BV (2.6) BS05 MG ? GO:0003723 ... P60492 25132179
    57468 1vy4:BW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    57469 1vy4:BW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    57470 1vy4:BX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    57471 1vy4:BX (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    57472 1vy4:BY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    57473 1vy4:BY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    57474 1vy4:BZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    57475 1vy4:BZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    57476 1vy4:CB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    57477 1vy4:CC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    57478 1vy4:CD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    57479 1vy4:CD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    57480 1vy4:CE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    57481 1vy4:CE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    57482 1vy4:CF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    57483 1vy4:CF (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    57484 1vy4:CG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    57485 1vy4:CG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    57486 1vy4:CH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    57487 1vy4:CI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    57488 1vy4:CI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    57489 1vy4:CJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    57490 1vy4:CJ (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 25132179
    57491 1vy4:CK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    57492 1vy4:CL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    57493 1vy4:CL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    57494 1vy4:CM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    57495 1vy4:CM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    57496 1vy4:CM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    57497 1vy4:CN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    57498 1vy4:CN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    57499 1vy4:CO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    57500 1vy4:CO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    57501 1vy4:CP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    57502 1vy4:CQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    57503 1vy4:CR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    57504 1vy4:CS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    57505 1vy4:CT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    57506 1vy4:CT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    57507 1vy4:D0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    57508 1vy4:D0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    57509 1vy4:D1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    57510 1vy4:D1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    57511 1vy4:D2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    57512 1vy4:D3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    57513 1vy4:D3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    57514 1vy4:D3 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    57515 1vy4:D4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    57516 1vy4:D4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    57517 1vy4:D5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    57518 1vy4:D5 (2.6) BS02 ZN ? GO:0003735 ... P80339 25132179
    57519 1vy4:D6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    57520 1vy4:D6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    57521 1vy4:D7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    57522 1vy4:D8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    57523 1vy4:D9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    57524 1vy4:D9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    57525 1vy4:DD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    57526 1vy4:DD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    57527 1vy4:DD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    57528 1vy4:DD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    57529 1vy4:DD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    57530 1vy4:DE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    57531 1vy4:DE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    57532 1vy4:DE (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    57533 1vy4:DF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    57534 1vy4:DF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    57535 1vy4:DF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    57536 1vy4:DG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    57537 1vy4:DG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    57538 1vy4:DG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    57539 1vy4:DG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    57540 1vy4:DH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    57541 1vy4:DI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    57542 1vy4:DN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    57543 1vy4:DO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    57544 1vy4:DO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    57545 1vy4:DP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    57546 1vy4:DQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    57547 1vy4:DQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    57548 1vy4:DQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    57549 1vy4:DQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    57550 1vy4:DQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    57551 1vy4:DR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    57552 1vy4:DS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    57553 1vy4:DS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    57554 1vy4:DT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    57555 1vy4:DT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    57556 1vy4:DU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    57557 1vy4:DU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    57558 1vy4:DU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    57559 1vy4:DV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    57560 1vy4:DV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    57561 1vy4:DV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    57562 1vy4:DW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    57563 1vy4:DW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    57564 1vy4:DX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    57565 1vy4:DY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    57566 1vy4:DY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    57567 1vy4:DZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    57568 1vy4:DZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    57569 1vy5:AB (2.55) BS01 rna ? GO:0003735 ... P80371 25132179
    57570 1vy5:AC (2.55) BS01 rna ? GO:0003676 ... P80372 25132179
    57571 1vy5:AD (2.55) BS01 rna ? GO:0003723 ... P80373 25132179
    57572 1vy5:AD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    57573 1vy5:AE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    57574 1vy5:AE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    57575 1vy5:AE (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    57576 1vy5:AF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    57577 1vy5:AG (2.55) BS01 rna ? GO:0000028 ... P17291 25132179
    57578 1vy5:AG (2.55) BS02 rna ? GO:0000028 ... P17291 25132179
    57579 1vy5:AH (2.55) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    57580 1vy5:AI (2.55) BS01 rna ? GO:0000049 ... P80374 25132179
    57581 1vy5:AI (2.55) BS02 rna ? GO:0000049 ... P80374 25132179
    57582 1vy5:AJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    57583 1vy5:AK (2.55) BS01 rna ? GO:0003735 ... P80376 25132179
    57584 1vy5:AK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    57585 1vy5:AL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    57586 1vy5:AL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    57587 1vy5:AM (2.55) BS01 rna ? GO:0000049 ... P80377 25132179
    57588 1vy5:AM (2.55) BS02 rna ? GO:0000049 ... P80377 25132179
    57589 1vy5:AM (2.55) BS03 rna ? GO:0000049 ... P80377 25132179
    57590 1vy5:AM (2.55) BS04 MG ? GO:0000049 ... P80377 25132179
    57591 1vy5:AN (2.55) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    57592 1vy5:AN (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    57593 1vy5:AO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    57594 1vy5:AO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    57595 1vy5:AP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    57596 1vy5:AQ (2.55) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    57597 1vy5:AR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    57598 1vy5:AS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    57599 1vy5:AT (2.55) BS01 rna ? GO:0003723 ... P80380 25132179
    57600 1vy5:B0 (2.55) BS01 rna ? GO:0003735 ... P60493 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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