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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    55801 1v6x:B (2.1) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55802 1v6x:B (2.1) BS03 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55803 1v6x:B (2.1) BS04 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55804 1v6x:B (2.1) BS05 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55805 1v71:A (1.7) BS01 MG 4.3.1.17
    4.3.1.18
    5.1.1.18
    GO:0000287 ... O59791 N/A
    55806 1v71:A (1.7) BS02 PLP 4.3.1.17
    4.3.1.18
    5.1.1.18
    GO:0000287 ... O59791 N/A
    55807 1v72:A (2.05) BS01 ZN 4.1.2.48 GO:0004793 ... Q59IT3 N/A
    55808 1v72:A (2.05) BS02 PLP 4.1.2.48 GO:0004793 ... Q59IT3 N/A
    55809 1v73:A (1.82) BS01 CA 3.1.3.48 GO:0004725 ... Q9S427 15713885
    55810 1v73:A (1.82) BS02 CA 3.1.3.48 GO:0004725 ... Q9S427 15713885
    55811 1v75:A (2.02) BS01 HEM ? GO:0004601 ... P83134 14529497
    55812 1v75:B (2.02) BS01 HEM ? GO:0004601 ... P83133 14529497
    55813 1v79:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 15139750
    55814 1v79:A (2.5) BS02 FR7 3.5.4.4 GO:0004000 ... P56658 15139750 MOAD: Ki=13nM
    PDBbind: -logKd/Ki=7.89, Ki=13nM
    55815 1v7a:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 15139750
    55816 1v7a:A (2.5) BS02 FRC 3.5.4.4 GO:0004000 ... P56658 15139750 MOAD: Ki=9.8nM
    PDBbind: -logKd/Ki=8.01, Ki=9.8nM
    55817 1v7c:A (2.0) BS01 HEY 4.2.3.1 GO:0004795 ... P83823 12952961
    55818 1v7c:B (2.0) BS01 HEY 4.2.3.1 GO:0004795 ... P83823 12952961
    55819 1v7c:C (2.0) BS01 HEY 4.2.3.1 GO:0004795 ... P83823 12952961
    55820 1v7c:D (2.0) BS01 HEY 4.2.3.1 GO:0004795 ... P83823 12952961
    55821 1v7p:C (1.9) BS01 MN ? N/A P17301 15276841
    55822 1v7s:A (1.14) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55823 1v7s:A (1.14) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55824 1v7s:A (1.14) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55825 1v7s:A (1.14) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55826 1v7s:A (1.14) BS05 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55827 1v7t:A (1.13) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55828 1v7t:A (1.13) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55829 1v7t:A (1.13) BS03 NA 3.2.1.17 GO:0003796 ... P00698 15039550
    55830 1v7t:B (1.13) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 15039550
    55831 1v7t:B (1.13) BS02 NA 3.2.1.17 GO:0003796 ... P00698 15039550
    55832 1v7u:A (2.35) BS01 FPP 2.5.1.31 GO:0000287 ... P60472 15044730
    55833 1v7u:A (2.35) BS02 FPP 2.5.1.31 GO:0000287 ... P60472 15044730
    55834 1v7v:A (1.8) BS01 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    55835 1v7v:A (1.8) BS02 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    55836 1v7w:A (1.6) BS01 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    55837 1v7w:A (1.6) BS02 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    55838 1v7x:A (2.0) BS01 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    55839 1v7x:A (2.0) BS02 CA 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    55840 1v7x:A (2.0) BS03 SO4 2.4.1.280 GO:0003824 ... Q76IQ9 15274915
    55841 1v7z:A (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    55842 1v7z:A (1.6) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    55843 1v7z:A (1.6) BS03 CRN 3.5.2.10 GO:0006601 ... P83772 15003455
    55844 1v7z:B (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    55845 1v7z:B (1.6) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    55846 1v7z:B (1.6) BS03 CRN 3.5.2.10 GO:0006601 ... P83772 15003455
    55847 1v7z:C (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    55848 1v7z:C (1.6) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    55849 1v7z:C (1.6) BS03 CRN 3.5.2.10 GO:0006601 ... P83772 15003455
    55850 1v7z:D (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    55851 1v7z:D (1.6) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    55852 1v7z:D (1.6) BS03 CRN 3.5.2.10 GO:0006601 ... P83772 15003455
    55853 1v7z:E (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    55854 1v7z:E (1.6) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    55855 1v7z:E (1.6) BS03 CRN 3.5.2.10 GO:0006601 ... P83772 15003455
    55856 1v7z:F (1.6) BS01 MN 3.5.2.10 GO:0006601 ... P83772 15003455
    55857 1v7z:F (1.6) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 15003455
    55858 1v7z:F (1.6) BS03 CRN 3.5.2.10 GO:0006601 ... P83772 15003455
    55859 1v83:A (1.9) BS01 MN 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55860 1v83:A (1.9) BS02 UDP 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55861 1v83:B (1.9) BS01 MN 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55862 1v83:B (1.9) BS02 UDP 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55863 1v84:A (1.82) BS01 GAL 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55864 1v84:A (1.82) BS02 UDP 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55865 1v84:B (1.82) BS01 GAL 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55866 1v84:B (1.82) BS02 MN 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55867 1v84:B (1.82) BS03 UDP 2.4.1.135 GO:0015018 ... Q9P2W7 14993226
    55868 1v87:A (-1.00) BS01 ZN 2.3.2.27 GO:0007219 ... Q8R3P2 N/A
    55869 1v87:A (-1.00) BS02 ZN 2.3.2.27 GO:0007219 ... Q8R3P2 N/A
    55870 1v8b:A (2.4) BS01 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55871 1v8b:A (2.4) BS02 ADN 3.13.2.1 GO:0004013 ... P50250 15476817
    55872 1v8b:A (2.4) BS03 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55873 1v8b:B (2.4) BS01 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55874 1v8b:B (2.4) BS02 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55875 1v8b:B (2.4) BS03 ADN 3.13.2.1 GO:0004013 ... P50250 15476817
    55876 1v8b:C (2.4) BS01 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55877 1v8b:C (2.4) BS02 ADN 3.13.2.1 GO:0004013 ... P50250 15476817
    55878 1v8b:C (2.4) BS03 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55879 1v8b:D (2.4) BS01 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55880 1v8b:D (2.4) BS02 NAD 3.13.2.1 GO:0004013 ... P50250 15476817
    55881 1v8b:D (2.4) BS03 ADN 3.13.2.1 GO:0004013 ... P50250 15476817
    55882 1v8j:A (3.24) BS01 ADP ? GO:0003777 ... Q922S8 14980225
    55883 1v8k:A (2.25) BS01 ANP ? GO:0003777 ... Q922S8 14980225
    55884 1v8l:A (2.1) BS01 APR 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55885 1v8m:A (1.8) BS01 APR 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55886 1v8r:A (1.8) BS01 APR 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55887 1v8s:A (2.2) BS01 MG 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55888 1v8t:A (2.6) BS01 R5P 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55889 1v8v:A (1.97) BS01 MG 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55890 1v8v:A (1.97) BS02 APR 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55891 1v8x:A (1.85) BS01 FRU 1.14.14.18 GO:0004392 ... P71119 14966119
    55892 1v8x:A (1.85) BS02 HEM 1.14.14.18 GO:0004392 ... P71119 14966119
    55893 1v8x:A (1.85) BS03 OXY 1.14.14.18 GO:0004392 ... P71119 14966119
    55894 1v8x:B (1.85) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 14966119
    55895 1v8x:B (1.85) BS02 OXY 1.14.14.18 GO:0004392 ... P71119 14966119
    55896 1v8x:C (1.85) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 14966119
    55897 1v8y:A (1.65) BS01 APR 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    55898 1v8z:A (2.21) BS01 PLP 4.2.1.20 GO:0000162 ... Q8U093 15206928
    55899 1v8z:B (2.21) BS01 PLP 4.2.1.20 GO:0000162 ... Q8U093 15206928
    55900 1v8z:C (2.21) BS01 PLP 4.2.1.20 GO:0000162 ... Q8U093 15206928
    55901 1v8z:D (2.21) BS01 PLP 4.2.1.20 GO:0000162 ... Q8U093 15206928
    55902 1v93:A (1.9) BS01 FAD 1.5.1.54 GO:0000166 ... Q9RA47 N/A
    55903 1v97:A (1.94) BS01 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55904 1v97:A (1.94) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55905 1v97:A (1.94) BS03 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55906 1v97:A (1.94) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55907 1v97:A (1.94) BS05 FYX 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401 BindingDB: IC50=5.3nM, Ki=5.7nM
    55908 1v97:B (1.94) BS01 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55909 1v97:B (1.94) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55910 1v97:B (1.94) BS03 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55911 1v97:B (1.94) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    55912 1v97:B (1.94) BS05 FYX 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401 BindingDB: IC50=5.3nM, Ki=5.7nM
    55913 1v98:A (1.82) BS01 MG 1.8.1.9 GO:0005737 ... Q5SI93 N/A
    55914 1v98:B (1.82) BS01 MG 1.8.1.9 GO:0005737 ... Q5SI93 N/A
    55915 1v9a:A (2.0) BS01 SAH 2.1.1.107 GO:0004851 ... Q5SKH6 15983414
    55916 1v9a:B (2.0) BS01 SAH 2.1.1.107 GO:0004851 ... Q5SKH6 15983414
    55917 1v9e:A (1.95) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004089 ... P00921 15039588
    55918 1v9e:B (1.95) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004089 ... P00921 15039588
    55919 1v9h:A (2.0) BS01 U5P 4.6.1.19 GO:0003723 ... P23540 15322360
    55920 1v9i:C (2.95) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004089 ... P00921 N/A
    55921 1v9l:A (2.8) BS01 NAD 1.4.1.2 GO:0000166 ... Q9Y8I4 15571725
    55922 1v9l:B (2.8) BS01 NAD 1.4.1.2 GO:0000166 ... Q9Y8I4 15571725
    55923 1v9l:C (2.8) BS01 NAD 1.4.1.2 GO:0000166 ... Q9Y8I4 15571725
    55924 1v9l:D (2.8) BS01 NAD 1.4.1.2 GO:0000166 ... Q9Y8I4 15571725
    55925 1v9l:E (2.8) BS01 NAD 1.4.1.2 GO:0000166 ... Q9Y8I4 15571725
    55926 1v9l:F (2.8) BS01 NAD 1.4.1.2 GO:0000166 ... Q9Y8I4 15571725
    55927 1v9n:A (2.1) BS01 NDP 1.1.1.37 GO:0005737 ... O59028 N/A
    55928 1v9o:A (2.0) BS01 ADP ? GO:0005524 ... P83820 15629661
    55929 1v9o:A (2.0) BS02 ADP ? GO:0005524 ... P83820 15629661
    55930 1v9o:B (2.0) BS01 ADP ? GO:0005524 ... P83820 15629661
    55931 1v9o:B (2.0) BS02 ADP ? GO:0005524 ... P83820 15629661
    55932 1v9o:C (2.0) BS01 ADP ? GO:0005524 ... P83820 15629661
    55933 1v9o:C (2.0) BS02 ADP ? GO:0005524 ... P83820 15629661
    55934 1v9p:A (2.9) BS01 ZN 6.5.1.2 GO:0003677 ... Q9ZHI0 10698952
    55935 1v9p:A (2.9) BS02 AMP 6.5.1.2 GO:0003677 ... Q9ZHI0 10698952
    55936 1v9p:B (2.9) BS01 ZN 6.5.1.2 GO:0003677 ... Q9ZHI0 10698952
    55937 1v9p:B (2.9) BS02 AMP 6.5.1.2 GO:0003677 ... Q9ZHI0 10698952
    55938 1v9q:A (1.45) BS01 CZM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 15869276
    55939 1v9t:B (1.7) BS01 peptide 5.2.1.8 GO:0000413 ... P0AFL3 15355356
    55940 1v9u:1 (3.6) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P04936 15064754
    55941 1v9u:3 (3.6) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P04936 15064754
    55942 1v9u:5 (3.6) BS01 CA ? N/A P98155 15064754
    55943 1v9x:A (-1.00) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003677 ... Q9ZP54 N/A
    55944 1v9y:A (1.32) BS01 HEM 3.1.4.52 N/A P76129 14982921
    55945 1v9y:B (1.32) BS01 HEM 3.1.4.52 N/A P76129 14982921
    55946 1v9z:A (1.9) BS01 HEM 3.1.4.52 N/A P76129 14982921
    55947 1v9z:B (1.9) BS01 HEM 3.1.4.52 N/A P76129 14982921
    55948 1va1:A (-1.00) BS01 ZN ? N/A P08047 15609997
    55949 1va2:A (-1.00) BS01 ZN ? N/A P08047 15609997
    55950 1va6:A (2.1) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55951 1va6:A (2.1) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55952 1va6:A (2.1) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55953 1va6:A (2.1) BS04 P2S 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55954 1va6:A (2.1) BS05 ADP 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55955 1va6:B (2.1) BS01 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55956 1va6:B (2.1) BS02 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55957 1va6:B (2.1) BS03 MG 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55958 1va6:B (2.1) BS04 P2S 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55959 1va6:B (2.1) BS05 ADP 6.3.2.2 GO:0003824 ... P0A6W9 15477603
    55960 1vac:A (2.5) BS01 peptide ? N/A P01901 7708669
    55961 1vad:A (2.5) BS01 peptide ? N/A P01901 7708669
    55962 1vaf:A (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 15071192
    55963 1vaf:A (2.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 15071192
    55964 1vaf:A (2.9) BS03 ARR 1.14.13.39 GO:0004517 ... P29477 15071192 BindingDB: IC50=5000nM
    55965 1vaf:B (2.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29477 15071192
    55966 1vaf:B (2.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 15071192
    55967 1vaf:B (2.9) BS03 H4B 1.14.13.39 GO:0004517 ... P29477 15071192
    55968 1vaf:B (2.9) BS04 ARR 1.14.13.39 GO:0004517 ... P29477 15071192 BindingDB: IC50=5000nM
    55969 1vag:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 15071192
    55970 1vag:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 15071192
    55971 1vag:A (2.0) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 15071192
    55972 1vag:A (2.0) BS04 ARR 1.14.13.39 GO:0004517 ... P29476 15071192 BindingDB: IC50=120nM
    55973 1vah:A (2.4) BS01 CA 3.2.1.1 GO:0003824 ... P00690 15517985
    55974 1vai:B (1.8) BS01 peptide 5.2.1.8 GO:0000413 ... P0AFL3 15355356
    55975 1vak:A (3.05) BS01 CA ? GO:0005198 ... Q9EB06 15342251
    55976 1val:A (3.0) BS01 PNG ? GO:0030246 ... P02866 8812993
    55977 1val:A (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    55978 1val:A (3.0) BS03 CA ? GO:0030246 ... P02866 8812993
    55979 1val:B (3.0) BS01 PNG ? GO:0030246 ... P02866 8812993
    55980 1val:B (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    55981 1val:B (3.0) BS03 CA ? GO:0030246 ... P02866 8812993
    55982 1val:C (3.0) BS01 PNG ? GO:0030246 ... P02866 8812993
    55983 1val:C (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    55984 1val:C (3.0) BS03 CA ? GO:0030246 ... P02866 8812993
    55985 1val:D (3.0) BS01 PNG ? GO:0030246 ... P02866 8812993
    55986 1val:D (3.0) BS02 MN ? GO:0030246 ... P02866 8812993
    55987 1val:D (3.0) BS03 CA ? GO:0030246 ... P02866 8812993
    55988 1vam:A (2.75) BS01 PNA ? GO:0030246 ... P02866 8812993
    55989 1vam:A (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    55990 1vam:A (2.75) BS03 CA ? GO:0030246 ... P02866 8812993
    55991 1vam:B (2.75) BS01 PNA ? GO:0030246 ... P02866 8812993
    55992 1vam:B (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    55993 1vam:B (2.75) BS03 CA ? GO:0030246 ... P02866 8812993
    55994 1vam:C (2.75) BS01 PNA ? GO:0030246 ... P02866 8812993
    55995 1vam:C (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    55996 1vam:C (2.75) BS03 CA ? GO:0030246 ... P02866 8812993
    55997 1vam:D (2.75) BS01 PNA ? GO:0030246 ... P02866 8812993
    55998 1vam:D (2.75) BS02 MN ? GO:0030246 ... P02866 8812993
    55999 1vam:D (2.75) BS03 CA ? GO:0030246 ... P02866 8812993
    56000 1vao:A (2.5) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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