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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42001 1q3r:A (2.9) BS01 SO4 3.6.4.9 GO:0005524 ... P61112 14729342
    42002 1q3s:A (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42003 1q3s:B (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42004 1q3s:C (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42005 1q3s:D (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42006 1q3s:E (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42007 1q3s:F (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42008 1q3s:G (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42009 1q3s:H (3.0) BS01 ADP 3.6.4.9 GO:0005524 ... P61112 14729342
    42010 1q3u:A (2.9) BS01 dna ? GO:0003677 ... P06956 12954782
    42011 1q3u:A (2.9) BS02 dna ? GO:0003677 ... P06956 12954782
    42012 1q3u:B (2.9) BS01 dna ? GO:0003677 ... P06956 12954782
    42013 1q3u:B (2.9) BS02 dna ? GO:0003677 ... P06956 12954782
    42014 1q3u:E (2.9) BS01 dna ? GO:0003677 ... P06956 12954782
    42015 1q3u:E (2.9) BS02 dna ? GO:0003677 ... P06956 12954782
    42016 1q3u:F (2.9) BS01 dna ? GO:0003677 ... P06956 12954782
    42017 1q3u:F (2.9) BS02 dna ? GO:0003677 ... P06956 12954782
    42018 1q3v:A (2.91) BS01 dna ? GO:0003677 ... P06956 12954782
    42019 1q3v:A (2.91) BS02 dna ? GO:0003677 ... P06956 12954782
    42020 1q3v:A (2.91) BS03 MG ? GO:0003677 ... P06956 12954782
    42021 1q3v:B (2.91) BS01 dna ? GO:0003677 ... P06956 12954782
    42022 1q3v:B (2.91) BS02 dna ? GO:0003677 ... P06956 12954782
    42023 1q3v:B (2.91) BS03 dna ? GO:0003677 ... P06956 12954782
    42024 1q3v:E (2.91) BS01 dna ? GO:0003677 ... P06956 12954782
    42025 1q3v:E (2.91) BS02 dna ? GO:0003677 ... P06956 12954782
    42026 1q3v:F (2.91) BS01 dna ? GO:0003677 ... P06956 12954782
    42027 1q3v:F (2.91) BS02 dna ? GO:0003677 ... P06956 12954782
    42028 1q3v:F (2.91) BS03 dna ? GO:0003677 ... P06956 12954782
    42029 1q3w:A (2.3) BS01 ATU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=4nM
    BindingDB: IC50=4nM
    42030 1q3w:B (2.3) BS01 ATU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    42031 1q3y:A (-1.00) BS01 ZN N/A GO:0003676 ... N/A 15163759
    42032 1q3y:A (-1.00) BS02 ZN N/A GO:0003676 ... N/A 15163759
    42033 1q3z:A (-1.00) BS01 ZN N/A GO:0003676 ... N/A 15163759
    42034 1q3z:A (-1.00) BS02 ZN N/A GO:0003676 ... N/A 15163759
    42035 1q41:A (2.1) BS01 IXM 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=22nM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=200nM
    42036 1q41:B (2.1) BS01 IXM 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=22nM
    BindingDB: IC50=200nM
    42037 1q43:A (2.0) BS01 CMP ? N/A O88703 12968185
    42038 1q43:B (2.0) BS01 CMP ? N/A O88703 12968185
    42039 1q45:A (2.0) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FUP0 15468319
    42040 1q45:B (2.0) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FUP0 15468319
    42041 1q4g:A (2.0) BS01 BMA 1.14.99.1 GO:0001516 ... P05979 14672659
    42042 1q4g:A (2.0) BS02 BFL 1.14.99.1 GO:0001516 ... P05979 14672659 BindingDB: IC50=32nM, Ki=130nM
    42043 1q4g:A (2.0) BS03 HEM 1.14.99.1 GO:0001516 ... P05979 14672659
    42044 1q4g:A (2.0) BS04 GOL 1.14.99.1 GO:0001516 ... P05979 14672659
    42045 1q4g:A (2.0) BS05 GOL 1.14.99.1 GO:0001516 ... P05979 14672659
    42046 1q4g:B (2.0) BS01 BFL 1.14.99.1 GO:0001516 ... P05979 14672659 BindingDB: IC50=32nM, Ki=130nM
    42047 1q4g:B (2.0) BS02 HEM 1.14.99.1 GO:0001516 ... P05979 14672659
    42048 1q4g:B (2.0) BS03 GOL 1.14.99.1 GO:0001516 ... P05979 14672659
    42049 1q4g:B (2.0) BS04 GOL 1.14.99.1 GO:0001516 ... P05979 14672659
    42050 1q4g:B (2.0) BS05 GOL 1.14.99.1 GO:0001516 ... P05979 14672659
    42051 1q4j:A (2.2) BS01 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    42052 1q4j:A (2.2) BS02 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    42053 1q4j:B (2.2) BS01 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    42054 1q4j:B (2.2) BS02 GTX 2.5.1.18 GO:0004364 ... Q8ILQ7 12972411
    42055 1q4k:A (2.3) BS01 peptide 2.7.11.21 N/A P53350 14592974
    42056 1q4k:B (2.3) BS01 peptide 2.7.11.21 N/A P53350 14592974
    42057 1q4k:C (2.3) BS01 peptide 2.7.11.21 N/A P53350 14592974
    42058 1q4l:A (2.77) BS01 679 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 PDBbind: -logKd/Ki=7.40, Kd=40nM
    BindingDB: IC50=76nM
    42059 1q4l:B (2.77) BS01 679 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 BindingDB: IC50=76nM
    42060 1q4n:X (2.07) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 14678792
    42061 1q4q:A (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42062 1q4q:A (2.1) BS02 peptide 2.3.2.27 N/A Q24306 14517550
    42063 1q4q:A (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    42064 1q4q:B (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42065 1q4q:B (2.1) BS02 peptide 2.3.2.27 N/A Q24306 14517550
    42066 1q4q:B (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    42067 1q4q:C (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42068 1q4q:C (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    42069 1q4q:D (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42070 1q4q:D (2.1) BS02 peptide 2.3.2.27 N/A Q24306 14517550
    42071 1q4q:D (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    42072 1q4q:E (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42073 1q4q:E (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    42074 1q4q:F (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42075 1q4q:F (2.1) BS02 peptide 2.3.2.27 N/A Q24306 14517550
    42076 1q4q:F (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    42077 1q4q:G (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42078 1q4q:G (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    42079 1q4q:H (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42080 1q4q:H (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    42081 1q4q:I (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42082 1q4q:I (2.1) BS02 peptide 2.3.2.27 N/A Q24306 14517550
    42083 1q4q:I (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    42084 1q4q:J (2.1) BS01 peptide 2.3.2.27 N/A Q24306 14517550
    42085 1q4q:J (2.1) BS02 peptide 2.3.2.27 N/A Q24306 14517550
    42086 1q4q:J (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    42087 1q4r:A (1.9) BS01 MG ? GO:0005829 ... Q9LUV2 15326607
    42088 1q4s:A (1.95) BS01 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    42089 1q4s:A (1.95) BS02 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    42090 1q4s:B (1.95) BS01 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    42091 1q4s:B (1.95) BS02 COA 3.1.2.23 GO:0005829 ... Q04416 12907670
    42092 1q4t:A (1.6) BS01 4CO 3.1.2.23 GO:0005829 ... Q04416 12907670 MOAD: Ki=0.003uM
    42093 1q4t:A (1.6) BS02 4CO 3.1.2.23 GO:0005829 ... Q04416 12907670 MOAD: Ki=0.003uM
    42094 1q4t:B (1.6) BS01 4CO 3.1.2.23 GO:0005829 ... Q04416 12907670 MOAD: Ki=0.003uM
    42095 1q4t:B (1.6) BS02 4CO 3.1.2.23 GO:0005829 ... Q04416 12907670 MOAD: Ki=0.003uM
    42096 1q4u:A (1.6) BS01 4CA 3.1.2.23 GO:0005829 ... Q04416 12907670 MOAD: Ki=0.6uM
    42097 1q4u:A (1.6) BS02 4CA 3.1.2.23 GO:0005829 ... Q04416 12907670 MOAD: Ki=0.6uM
    42098 1q4u:B (1.6) BS01 4CA 3.1.2.23 GO:0005829 ... Q04416 12907670
    42099 1q4u:B (1.6) BS02 4CA 3.1.2.23 GO:0005829 ... Q04416 12907670
    42100 1q4v:B (2.0) BS01 peptide ? GO:0005179 ... P01308 14596591
    42101 1q4v:D (2.0) BS01 peptide ? GO:0005179 ... P01308 14596591
    42102 1q4w:A (1.93) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    42103 1q4w:A (1.93) BS02 DQU 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=0.35uM
    PDBbind: -logKd/Ki=6.46, Ki=0.35uM
    42104 1q4x:A (2.8) BS01 G24 ? GO:0003677 ... P10828 14673100 PDBbind: -logKd/Ki=9.48, Kd=0.33nM
    42105 1q51:A (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42106 1q51:B (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42107 1q51:C (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42108 1q51:D (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42109 1q51:E (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42110 1q51:F (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42111 1q51:G (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42112 1q51:H (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42113 1q51:I (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42114 1q51:J (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42115 1q51:K (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42116 1q51:L (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    42117 1q54:A (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    42118 1q54:A (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    42119 1q54:A (1.93) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 12630859 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    42120 1q54:B (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    42121 1q54:B (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    42122 1q54:B (1.93) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 12630859 MOAD: Ki=1.4uM
    42123 1q55:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    42124 1q55:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    42125 1q55:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    42126 1q55:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    42127 1q55:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42128 1q55:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    42129 1q55:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    42130 1q55:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    42131 1q55:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    42132 1q55:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    42133 1q55:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    42134 1q55:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    42135 1q55:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    42136 1q55:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    42137 1q55:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    42138 1q55:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    42139 1q55:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42140 1q55:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    42141 1q55:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    42142 1q55:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    42143 1q55:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    42144 1q55:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    42145 1q55:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    42146 1q55:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    42147 1q55:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    42148 1q55:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    42149 1q55:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    42150 1q55:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    42151 1q55:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42152 1q55:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    42153 1q55:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    42154 1q55:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    42155 1q55:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    42156 1q55:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    42157 1q55:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    42158 1q55:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    42159 1q55:D (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    42160 1q55:D (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    42161 1q55:D (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    42162 1q55:D (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    42163 1q55:D (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42164 1q55:D (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    42165 1q55:D (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    42166 1q55:D (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    42167 1q55:D (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    42168 1q55:D (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    42169 1q55:D (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    42170 1q55:D (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    42171 1q5a:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    42172 1q5a:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    42173 1q5a:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    42174 1q5a:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    42175 1q5a:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42176 1q5a:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    42177 1q5a:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    42178 1q5a:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    42179 1q5a:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    42180 1q5a:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    42181 1q5a:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    42182 1q5a:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    42183 1q5a:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    42184 1q5a:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    42185 1q5a:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    42186 1q5a:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    42187 1q5a:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42188 1q5a:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    42189 1q5a:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    42190 1q5a:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    42191 1q5a:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    42192 1q5a:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    42193 1q5a:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    42194 1q5a:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    42195 1q5b:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    42196 1q5b:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    42197 1q5b:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    42198 1q5b:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    42199 1q5b:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42200 1q5b:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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