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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39801 1p71:A (1.9) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39802 1p71:A (1.9) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39803 1p71:B (1.9) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39804 1p71:B (1.9) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39805 1p72:A (2.1) BS01 ADP 2.7.1.21 GO:0004797 ... P24425 14527394
    39806 1p72:A (2.1) BS02 THM 2.7.1.21 GO:0004797 ... P24425 14527394
    39807 1p72:B (2.1) BS01 ADP 2.7.1.21 GO:0004797 ... P24425 14527394
    39808 1p72:B (2.1) BS02 THM 2.7.1.21 GO:0004797 ... P24425 14527394
    39809 1p73:A (2.7) BS01 4TA 2.7.1.21 GO:0004797 ... P24425 14527394
    39810 1p73:B (2.7) BS01 4TA 2.7.1.21 GO:0004797 ... P24425 14527394
    39811 1p73:C (2.7) BS01 4TA 2.7.1.21 GO:0004797 ... P24425 14527394
    39812 1p73:D (2.7) BS01 4TA 2.7.1.21 GO:0004797 ... P24425 14527394
    39813 1p75:A (3.02) BS01 T5A 2.7.1.21 GO:0004797 ... P24425 14527394
    39814 1p75:B (3.02) BS01 T5A 2.7.1.21 GO:0004797 ... P24425 14527394
    39815 1p75:C (3.02) BS01 T5A 2.7.1.21 GO:0004797 ... P24425 14527394
    39816 1p75:D (3.02) BS01 T5A 2.7.1.21 GO:0004797 ... P24425 14527394
    39817 1p77:A (1.95) BS01 ATR 1.1.1.25 GO:0004764 ... P43876 12837789
    39818 1p78:A (2.25) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39819 1p78:A (2.25) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39820 1p78:B (2.25) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39821 1p78:B (2.25) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    39822 1p7a:A (-1.00) BS01 ZN ? N/A Q60980 12736264
    39823 1p7c:A (2.1) BS01 T5A 2.7.1.21 GO:0004797 ... P0DTH5 14527394
    39824 1p7c:B (2.1) BS01 THM 2.7.1.21 GO:0004797 ... P0DTH5 14527394
    39825 1p7d:A (2.95) BS01 dna 2.7.7.-
    3.1.-.-    		 GO:0003677 ... P03700 12887904
    39826 1p7d:A (2.95) BS02 dna 2.7.7.-
    3.1.-.-    		 GO:0003677 ... P03700 12887904
    39827 1p7d:B (2.95) BS01 dna 2.7.7.-
    3.1.-.-    		 GO:0003677 ... P03700 12887904
    39828 1p7d:B (2.95) BS02 dna 2.7.7.-
    3.1.-.-    		 GO:0003677 ... P03700 12887904
    39829 1p7h:L (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39830 1p7h:L (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39831 1p7h:M (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39832 1p7h:M (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39833 1p7h:N (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39834 1p7h:N (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39835 1p7h:O (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39836 1p7h:O (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    39837 1p7k:A (1.75) BS01 SO4 ? N/A I6L978 15340914
    39838 1p7k:A (1.75) BS02 EPE ? N/A I6L978 15340914
    39839 1p7k:B (1.75) BS01 SO4 ? N/A P01868 15340914
    39840 1p7k:H (1.75) BS01 SO4 ? N/A P01868 15340914
    39841 1p7k:H (1.75) BS02 SO4 ? N/A P01868 15340914
    39842 1p7k:H (1.75) BS03 SO4 ? N/A P01868 15340914
    39843 1p7k:H (1.75) BS04 SO4 ? N/A P01868 15340914
    39844 1p7k:L (1.75) BS01 EPE ? N/A I6L978 15340914
    39845 1p7l:A (2.5) BS01 ANP 2.5.1.6 GO:0000287 ... P0A817 14967023
    39846 1p7l:A (2.5) BS02 MET 2.5.1.6 GO:0000287 ... P0A817 14967023
    39847 1p7l:A (2.5) BS03 ANP 2.5.1.6 GO:0000287 ... P0A817 14967023
    39848 1p7l:B (2.5) BS01 ANP 2.5.1.6 GO:0000287 ... P0A817 14967023
    39849 1p7l:B (2.5) BS02 MET 2.5.1.6 GO:0000287 ... P0A817 14967023
    39850 1p7l:B (2.5) BS03 ANP 2.5.1.6 GO:0000287 ... P0A817 14967023
    39851 1p7l:C (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    39852 1p7l:C (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    39853 1p7l:C (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    39854 1p7l:C (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    39855 1p7l:D (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    39856 1p7l:D (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    39857 1p7l:D (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    39858 1p7l:D (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    39859 1p7m:A (-1.00) BS01 ZN 3.2.2.20 GO:0003824 ... P05100 13129925
    39860 1p7m:A (-1.00) BS02 ADK 3.2.2.20 GO:0003824 ... P05100 13129925 PDBbind: -logKd/Ki=4.38, Kd=42uM
    BindingDB: IC50=1500000nM
    39861 1p7p:A (1.8) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 12946347
    39862 1p7p:A (1.8) BS02 MPH 6.1.1.10 GO:0000166 ... P00959 12946347
    39863 1p7q:A (3.4) BS01 peptide ? N/A P04439 12897781
    39864 1p7r:A (2.85) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14556625
    39865 1p7r:A (2.85) BS02 NCT 1.14.15.1 GO:0004497 ... P00183 14556625
    39866 1p7t:A (1.95) BS01 MG 2.3.3.9 GO:0000287 ... P37330 12930982
    39867 1p7t:A (1.95) BS02 ACO 2.3.3.9 GO:0000287 ... P37330 12930982
    39868 1p7t:A (1.95) BS03 PYR 2.3.3.9 GO:0000287 ... P37330 12930982 MOAD: Ki=1mM
    39869 1p7t:B (1.95) BS01 MG 2.3.3.9 GO:0000287 ... P37330 12930982
    39870 1p7t:B (1.95) BS02 ACO 2.3.3.9 GO:0000287 ... P37330 12930982
    39871 1p7t:B (1.95) BS03 PYR 2.3.3.9 GO:0000287 ... P37330 12930982 MOAD: Ki=1mM
    39872 1p7v:A (1.08) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 N/A
    39873 1p7v:A (1.08) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    39874 1p7w:A (1.02) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 N/A
    39875 1p7w:A (1.02) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    39876 1p7y:A (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39877 1p7y:B (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39878 1p7y:C (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39879 1p7y:D (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39880 1p7z:A (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39881 1p7z:B (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39882 1p7z:C (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39883 1p7z:D (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39884 1p80:A (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39885 1p80:B (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39886 1p80:C (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39887 1p80:D (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    39888 1p81:A (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    39889 1p81:B (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    39890 1p81:C (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    39891 1p81:D (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    39892 1p84:C (2.5) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 12782631
    39893 1p84:C (2.5) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 12782631
    39894 1p84:C (2.5) BS03 DBT 7.1.1.8 GO:0005739 ... P00163 12782631
    39895 1p84:C (2.5) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 12782631
    39896 1p84:D (2.5) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 12782631
    39897 1p84:E (2.5) BS01 FES 7.1.1.8 GO:0008121 ... P08067 12782631
    39898 1p8d:A (2.8) BS01 peptide ? GO:0003677 ... P55055 12736258
    39899 1p8d:A (2.8) BS02 CO1 ? GO:0003677 ... P55055 12736258 BindingDB: EC50=286nM
    39900 1p8d:B (2.8) BS01 peptide ? GO:0003677 ... P55055 12736258
    39901 1p8d:B (2.8) BS02 CO1 ? GO:0003677 ... P55055 12736258 BindingDB: EC50=286nM
    39902 1p8h:A (1.52) BS01 RET ? GO:0005216 ... P02945 12842471
    39903 1p8i:A (1.86) BS01 RET ? GO:0005216 ... P02945 12842471
    39904 1p8j:A (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39905 1p8j:A (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39906 1p8j:A (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39907 1p8j:A (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39908 1p8j:B (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39909 1p8j:B (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39910 1p8j:B (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39911 1p8j:B (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39912 1p8j:C (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39913 1p8j:C (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39914 1p8j:C (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39915 1p8j:C (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39916 1p8j:D (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39917 1p8j:D (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39918 1p8j:D (2.6) BS03 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39919 1p8j:D (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39920 1p8j:D (2.6) BS05 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39921 1p8j:E (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39922 1p8j:E (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39923 1p8j:E (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39924 1p8j:E (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39925 1p8j:F (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39926 1p8j:F (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39927 1p8j:F (2.6) BS03 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39928 1p8j:F (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39929 1p8j:F (2.6) BS05 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39930 1p8j:G (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39931 1p8j:G (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39932 1p8j:G (2.6) BS03 FUC 3.4.21.75 GO:0004252 ... P23188 12794637
    39933 1p8j:G (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39934 1p8j:G (2.6) BS05 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39935 1p8j:H (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39936 1p8j:H (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    39937 1p8j:H (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39938 1p8j:H (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    39939 1p8k:Z (2.6) BS01 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    39940 1p8k:Z (2.6) BS02 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    39941 1p8k:Z (2.6) BS03 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    39942 1p8k:Z (2.6) BS04 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    39943 1p8k:Z (2.6) BS05 MG 3.1.-.- GO:0004519 ... P03880 14633971
    39944 1p8l:A (2.95) BS01 AMP ? GO:0000166 ... O41026 12930960
    39945 1p8m:A (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39946 1p8m:A (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39947 1p8m:B (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39948 1p8m:B (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39949 1p8m:C (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39950 1p8m:C (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39951 1p8n:A (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39952 1p8n:B (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39953 1p8n:C (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39954 1p8o:A (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39955 1p8o:A (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39956 1p8o:B (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39957 1p8o:B (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39958 1p8o:C (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39959 1p8o:C (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39960 1p8p:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39961 1p8p:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39962 1p8p:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39963 1p8p:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39964 1p8p:C (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39965 1p8p:C (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39966 1p8q:A (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39967 1p8q:A (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39968 1p8q:B (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39969 1p8q:B (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39970 1p8q:C (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39971 1p8q:C (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39972 1p8r:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39973 1p8r:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39974 1p8r:A (2.5) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 12820884
    39975 1p8r:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39976 1p8r:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39977 1p8r:B (2.5) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 12820884
    39978 1p8s:A (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39979 1p8s:A (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39980 1p8s:B (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39981 1p8s:B (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39982 1p8s:C (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39983 1p8s:C (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    39984 1p8u:A (1.62) BS01 RET ? GO:0005216 ... P02945 12842471
    39985 1p8v:C (2.6) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12855811
    39986 1p8v:C (2.6) BS02 DFP 3.4.21.5 GO:0004252 ... P00734 12855811
    39987 1p8x:A (2.0) BS01 CA ? GO:0051015 ... P06396 14527664
    39988 1p8x:A (2.0) BS02 CA ? GO:0051015 ... P06396 14527664
    39989 1p8x:A (2.0) BS03 CA ? GO:0051015 ... P06396 14527664
    39990 1p8x:B (2.0) BS01 CA ? GO:0051015 ... P06396 14527664
    39991 1p8x:B (2.0) BS02 CA ? GO:0051015 ... P06396 14527664
    39992 1p8x:B (2.0) BS03 CA ? GO:0051015 ... P06396 14527664
    39993 1p8x:C (2.0) BS01 CA ? GO:0051015 ... P06396 14527664
    39994 1p8x:C (2.0) BS02 CA ? GO:0051015 ... P06396 14527664
    39995 1p8x:C (2.0) BS03 CA ? GO:0051015 ... P06396 14527664
    39996 1p8z:A (2.6) BS01 ATP 3.6.4.- GO:0000287 ... P68135 14527665
    39997 1p8z:G (2.6) BS01 CA ? GO:0051015 ... P06396 14527665
    39998 1p91:A (2.8) BS01 ZN 2.1.1.187 GO:0006364 ... P36999 14999102
    39999 1p91:A (2.8) BS02 SAM 2.1.1.187 GO:0006364 ... P36999 14999102
    40000 1p91:B (2.8) BS01 ZN 2.1.1.187 GO:0006364 ... P36999 14999102
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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