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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8k23:A (3.75) BS01 dna N/A GO:0016787 ... F1D5V9 N/A
    2 8k23:A (3.75) BS02 dna N/A GO:0016787 ... F1D5V9 N/A
    3 8k23:A (3.75) BS03 MN N/A GO:0016787 ... F1D5V9 N/A
    4 8k23:A (3.75) BS04 MN N/A GO:0016787 ... F1D5V9 N/A
    5 8k23:B (3.75) BS01 rna N/A N/A F1D5V8 N/A
    6 8k23:B (3.75) BS02 dna N/A N/A F1D5V8 N/A
    7 8k23:B (3.75) BS03 dna N/A N/A F1D5V8 N/A
    8 8k23:C (3.75) BS01 rna N/A N/A F1D5V7 N/A
    9 8k23:C (3.75) BS02 dna N/A N/A F1D5V7 N/A
    10 8k23:C (3.75) BS03 dna N/A N/A F1D5V7 N/A
    11 8k23:D (3.75) BS01 dna N/A GO:0003677 ... F1D5W0 N/A
    12 8k23:E (3.75) BS01 dna N/A GO:0003677 ... F1D5W0 N/A
    13 8k23:E (3.75) BS02 dna N/A GO:0003677 ... F1D5W0 N/A
    14 8k23:G (3.75) BS01 rna N/A N/A F1D5V6 N/A
    15 8k23:G (3.75) BS02 dna N/A N/A F1D5V6 N/A
    16 8k23:H (3.75) BS01 rna N/A N/A F1D5V5 N/A
    17 8k23:I (3.75) BS01 rna N/A N/A F1D5V6 N/A
    18 8k23:I (3.75) BS02 dna N/A N/A F1D5V6 N/A
    19 8k23:J (3.75) BS01 rna N/A N/A F1D5V6 N/A
    20 8k23:J (3.75) BS02 dna N/A N/A F1D5V6 N/A
    21 8k23:K (3.75) BS01 rna N/A N/A F1D5V6 N/A
    22 8k23:K (3.75) BS02 dna N/A N/A F1D5V6 N/A
    23 8k23:K (3.75) BS03 dna N/A N/A F1D5V6 N/A
    24 8k23:L (3.75) BS01 rna N/A N/A F1D5V6 N/A
    25 8k23:L (3.75) BS02 dna N/A N/A F1D5V6 N/A
    26 8k23:M (3.75) BS01 rna N/A N/A F1D5V6 N/A
    27 8k23:M (3.75) BS02 dna N/A N/A F1D5V6 N/A
    28 8k23:a (3.75) BS01 dna N/A GO:0016787 ... F1D5V9 N/A
    29 8k23:a (3.75) BS02 dna N/A GO:0016787 ... F1D5V9 N/A
    30 8k23:a (3.75) BS03 MN N/A GO:0016787 ... F1D5V9 N/A
    31 8k23:a (3.75) BS04 MN N/A GO:0016787 ... F1D5V9 N/A
    32 8k23:b (3.75) BS01 rna N/A N/A F1D5V8 N/A
    33 8k23:b (3.75) BS02 dna N/A N/A F1D5V8 N/A
    34 8k23:b (3.75) BS03 dna N/A N/A F1D5V8 N/A
    35 8k23:c (3.75) BS01 rna N/A N/A F1D5V7 N/A
    36 8k23:c (3.75) BS02 dna N/A N/A F1D5V7 N/A
    37 8k23:c (3.75) BS03 dna N/A N/A F1D5V7 N/A
    38 8k23:d (3.75) BS01 dna N/A GO:0003677 ... F1D5W0 N/A
    39 8k23:e (3.75) BS01 dna N/A GO:0003677 ... F1D5W0 N/A
    40 8k23:g (3.75) BS01 rna N/A N/A F1D5V6 N/A
    41 8k23:g (3.75) BS02 dna N/A N/A F1D5V6 N/A
    42 8k23:h (3.75) BS01 rna N/A N/A F1D5V5 N/A
    43 8k23:i (3.75) BS01 rna N/A N/A F1D5V6 N/A
    44 8k23:i (3.75) BS02 dna N/A N/A F1D5V6 N/A
    45 8k23:j (3.75) BS01 rna N/A N/A F1D5V6 N/A
    46 8k23:j (3.75) BS02 dna N/A N/A F1D5V6 N/A
    47 8k23:k (3.75) BS01 rna N/A N/A F1D5V6 N/A
    48 8k23:k (3.75) BS02 dna N/A N/A F1D5V6 N/A
    49 8k23:k (3.75) BS03 dna N/A N/A F1D5V6 N/A
    50 8k23:l (3.75) BS01 rna N/A N/A F1D5V6 N/A
    51 8k23:l (3.75) BS02 dna N/A N/A F1D5V6 N/A
    52 8k23:m (3.75) BS01 rna N/A N/A F1D5V6 N/A
    53 8k23:m (3.75) BS02 dna N/A N/A F1D5V6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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