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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7vyf:A (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... A0A4X1SZP7 35145322
    2 7vyf:A (2.8) BS02 FMN 7.1.1.2 GO:0005739 ... A0A4X1SZP7 35145322
    3 7vyf:B (2.8) BS01 SF4 ? GO:0016020 ... A0A287BDC0 35145322
    4 7vyf:B (2.8) BS02 SF4 ? GO:0016020 ... A0A287BDC0 35145322
    5 7vyf:C (2.8) BS01 SF4 ? GO:0008137 ... A0A8D1TL60 35145322
    6 7vyf:C (2.8) BS02 970 ? GO:0008137 ... A0A8D1TL60 35145322
    7 7vyf:E (2.8) BS01 8Q1 ? GO:0045271 ... F1SJP6 35145322
    8 7vyf:I (2.8) BS01 peptide ? GO:0005739 ... A0A8W4F7N8 35145322
    9 7vyf:J (2.8) BS01 NDP ? N/A A0A287AE88 35145322
    10 7vyf:J (2.8) BS02 UQ ? N/A A0A287AE88 35145322
    11 7vyf:M (2.8) BS01 SF4 ? GO:0005743 ... A0A4X1V1H9 35145322
    12 7vyf:M (2.8) BS02 SF4 ? GO:0005743 ... A0A4X1V1H9 35145322
    13 7vyf:M (2.8) BS03 FES ? GO:0005743 ... A0A4X1V1H9 35145322
    14 7vyf:M (2.8) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    15 7vyf:O (2.8) BS01 FES 7.1.1.2 GO:0016491 ... A0A287BG40 35145322
    16 7vyf:Q (2.8) BS01 peptide ? GO:0016651 ... F1S1A8 35145322
    17 7vyf:Q (2.8) BS02 SF4 ? GO:0016651 ... F1S1A8 35145322
    18 7vyf:Q (2.8) BS03 970 ? GO:0016651 ... F1S1A8 35145322
    19 7vyf:T (2.8) BS01 ZN ? GO:0006120 ... F1S031 35145322
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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