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BioLiP
Download all results in tab-seperated text for 282 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6jo5:B (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    202 6jo5:B (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    203 6jo5:B (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    204 6jo5:B (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    205 6jo5:B (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    206 6jo5:B (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    207 6jo5:B (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    208 6jo5:B (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    209 6jo5:B (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    210 6jo5:B (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    211 6jo5:B (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    212 6jo5:B (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    213 6jo5:B (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    214 6jo5:B (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    215 6jo5:B (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    216 6jo5:B (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    217 6jo5:B (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    218 6jo5:B (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    219 6jo5:B (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    220 6jo5:B (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    221 6jo5:B (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    222 6jo5:B (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    223 6jo5:B (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    224 6jo5:B (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    225 6jo5:B (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    226 6jo5:B (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    227 6jo5:B (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    228 6jo5:B (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    229 6jo5:B (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    230 6jo5:B (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    231 6jo5:B (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    232 6jo5:B (2.9) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    233 6jo5:B (2.9) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    234 6jo5:B (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    235 6jo5:B (2.9) BS46 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    236 6jo5:B (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    237 6jo5:B (2.9) BS48 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    238 6jo5:B (2.9) BS49 PQN 1.97.1.12 GO:0000287 ... P09144 31182847
    239 6jo5:B (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    240 6jo5:B (2.9) BS51 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    241 6jo5:C (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... Q00914 31182847
    242 6jo5:C (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... Q00914 31182847
    243 6jo5:F (2.9) BS01 CLA ? GO:0009522 ... P12356 31182847
    244 6jo5:F (2.9) BS02 CLA ? GO:0009522 ... P12356 31182847
    245 6jo5:F (2.9) BS03 CLA ? GO:0009522 ... P12356 31182847
    246 6jo5:F (2.9) BS04 CLA ? GO:0009522 ... P12356 31182847
    247 6jo5:F (2.9) BS05 CLA ? GO:0009522 ... P12356 31182847
    248 6jo5:G (2.9) BS01 CLA ? GO:0009522 ... P14224 31182847
    249 6jo5:G (2.9) BS02 CLA ? GO:0009522 ... P14224 31182847
    250 6jo5:G (2.9) BS03 CLA ? GO:0009522 ... P14224 31182847
    251 6jo5:G (2.9) BS04 CLA ? GO:0009522 ... P14224 31182847
    252 6jo5:I (2.9) BS01 CLA ? GO:0009522 ... A8IFG7 31182847
    253 6jo5:I (2.9) BS02 CLA ? GO:0009522 ... A8IFG7 31182847
    254 6jo5:J (2.9) BS01 CLA ? GO:0009507 ... P59777 31182847
    255 6jo5:J (2.9) BS02 CLA ? GO:0009507 ... P59777 31182847
    256 6jo5:J (2.9) BS03 CLA ? GO:0009507 ... P59777 31182847
    257 6jo5:J (2.9) BS04 CLA ? GO:0009507 ... P59777 31182847
    258 6jo5:K (2.9) BS01 CLA ? GO:0009522 ... P14225 31182847
    259 6jo5:K (2.9) BS02 CLA ? GO:0009522 ... P14225 31182847
    260 6jo5:L (2.9) BS01 CLA ? GO:0009522 ... A8IL32 31182847
    261 6jo5:L (2.9) BS02 CLA ? GO:0009522 ... A8IL32 31182847
    262 6jo5:L (2.9) BS03 CLA ? GO:0009522 ... A8IL32 31182847
    263 6jo5:L (2.9) BS04 CLA ? GO:0009522 ... A8IL32 31182847
    264 6jo5:L (2.9) BS05 CLA ? GO:0009522 ... A8IL32 31182847
    265 6jo5:L (2.9) BS06 CLA ? GO:0009522 ... A8IL32 31182847
    266 6jo5:L (2.9) BS07 CLA ? GO:0009522 ... A8IL32 31182847
    267 6jo5:L (2.9) BS08 CLA ? GO:0009522 ... A8IL32 31182847
    268 6jo5:L (2.9) BS09 CLA ? GO:0009522 ... A8IL32 31182847
    269 6jo5:Z (2.9) BS01 CHL ? GO:0009765 ... Q05093 31182847
    270 6jo5:Z (2.9) BS02 CLA ? GO:0009765 ... Q05093 31182847
    271 6jo5:Z (2.9) BS03 CLA ? GO:0009765 ... Q05093 31182847
    272 6jo5:Z (2.9) BS04 CLA ? GO:0009765 ... Q05093 31182847
    273 6jo5:Z (2.9) BS05 CLA ? GO:0009765 ... Q05093 31182847
    274 6jo5:Z (2.9) BS06 CHL ? GO:0009765 ... Q05093 31182847
    275 6jo5:Z (2.9) BS07 CLA ? GO:0009765 ... Q05093 31182847
    276 6jo5:Z (2.9) BS08 CLA ? GO:0009765 ... Q05093 31182847
    277 6jo5:Z (2.9) BS09 CLA ? GO:0009765 ... Q05093 31182847
    278 6jo5:Z (2.9) BS10 CLA ? GO:0009765 ... Q05093 31182847
    279 6jo5:Z (2.9) BS11 CLA ? GO:0009765 ... Q05093 31182847
    280 6jo5:Z (2.9) BS12 CLA ? GO:0009765 ... Q05093 31182847
    281 6jo5:Z (2.9) BS13 CLA ? GO:0009765 ... Q05093 31182847
    282 6jo5:Z (2.9) BS14 CLA ? GO:0009765 ... Q05093 31182847
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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