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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v98:A2 (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    2 4v98:AF (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    3 4v98:AN (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    4 4v98:AV (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    5 4v98:Ad (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    6 4v98:Al (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    7 4v98:At (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    8 4v98:B2 (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    9 4v98:BF (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    10 4v98:BN (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    11 4v98:BV (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    12 4v98:Bd (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    13 4v98:Bl (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    14 4v98:Bt (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    15 4v98:CF (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    16 4v98:CN (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    17 4v98:CV (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    18 4v98:Cd (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    19 4v98:Cl (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    20 4v98:Ct (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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