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BioLiP
Download all results in tab-seperated text for 148 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8x:AB (3.35) BS01 rna ? GO:0003735 ... P80371 23945936
    2 4v8x:AC (3.35) BS01 rna ? GO:0003676 ... P80372 23945936
    3 4v8x:AD (3.35) BS01 rna ? GO:0003723 ... P80373 23945936
    4 4v8x:AD (3.35) BS02 ZN ? GO:0003723 ... P80373 23945936
    5 4v8x:AE (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 23945936
    6 4v8x:AF (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 23945936
    7 4v8x:AG (3.35) BS01 rna ? GO:0000028 ... P17291 23945936
    8 4v8x:AG (3.35) BS02 rna ? GO:0000028 ... P17291 23945936
    9 4v8x:AH (3.35) BS01 rna ? GO:0003735 ... P0DOY9 23945936
    10 4v8x:AI (3.35) BS01 rna ? GO:0000049 ... P80374 23945936
    11 4v8x:AJ (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 23945936
    12 4v8x:AK (3.35) BS01 rna ? GO:0003735 ... P80376 23945936
    13 4v8x:AL (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 23945936
    14 4v8x:AL (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 23945936
    15 4v8x:AM (3.35) BS01 rna ? GO:0000049 ... P80377 23945936
    16 4v8x:AM (3.35) BS02 rna ? GO:0000049 ... P80377 23945936
    17 4v8x:AM (3.35) BS03 rna ? GO:0000049 ... P80377 23945936
    18 4v8x:AN (3.35) BS01 rna ? GO:0003735 ... P0DOY6 23945936
    19 4v8x:AN (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 23945936
    20 4v8x:AO (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 23945936
    21 4v8x:AO (3.35) BS02 rna ? GO:0003735 ... Q5SJ76 23945936
    22 4v8x:AP (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 23945936
    23 4v8x:AQ (3.35) BS01 rna ? GO:0003735 ... P0DOY7 23945936
    24 4v8x:AR (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 23945936
    25 4v8x:AS (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 23945936
    26 4v8x:AT (3.35) BS01 rna ? GO:0003723 ... P80380 23945936
    27 4v8x:AY (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    28 4v8x:AY (3.35) BS02 rna 3.1.-.- GO:0003723 ... P69348 23945936
    29 4v8x:AY (3.35) BS03 rna 3.1.-.- GO:0003723 ... P69348 23945936
    30 4v8x:AZ (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    31 4v8x:B0 (3.35) BS01 rna ? GO:0003735 ... P60493 23945936
    32 4v8x:B0 (3.35) BS02 rna ? GO:0003735 ... P60493 23945936
    33 4v8x:B0 (3.35) BS03 rna ? GO:0003735 ... P60493 23945936
    34 4v8x:B1 (3.35) BS01 rna ? GO:0003735 ... P60494 23945936
    35 4v8x:B1 (3.35) BS02 rna ? GO:0003735 ... P60494 23945936
    36 4v8x:B2 (3.35) BS01 rna ? GO:0003735 ... Q5SHP6 23945936
    37 4v8x:B3 (3.35) BS01 rna ? GO:0003735 ... Q5SHQ6 23945936
    38 4v8x:B3 (3.35) BS02 rna ? GO:0003735 ... Q5SHQ6 23945936
    39 4v8x:B4 (3.35) BS01 rna ? GO:0003735 ... Q5SJE1 23945936
    40 4v8x:B5 (3.35) BS01 rna ? GO:0003735 ... P80339 23945936
    41 4v8x:B6 (3.35) BS01 rna ? GO:0000049 ... P35871 23945936
    42 4v8x:B7 (3.35) BS01 rna ? GO:0003735 ... P80340 23945936
    43 4v8x:B8 (3.35) BS01 rna ? GO:0003735 ... Q5SKU1 23945936
    44 4v8x:B9 (3.35) BS01 rna ? GO:0003735 ... Q5SHR2 23945936
    45 4v8x:BC (3.35) BS01 rna ? GO:0000049 ... Q5SLP7 23945936
    46 4v8x:BD (3.35) BS01 rna ? GO:0002181 ... P60405 23945936
    47 4v8x:BD (3.35) BS02 rna ? GO:0002181 ... P60405 23945936
    48 4v8x:BE (3.35) BS01 rna ? GO:0003735 ... Q5SHN8 23945936
    49 4v8x:BF (3.35) BS01 rna ? GO:0003735 ... Q5SHN9 23945936
    50 4v8x:BG (3.35) BS01 rna ? GO:0000049 ... Q5SHQ0 23945936
    51 4v8x:BG (3.35) BS02 rna ? GO:0000049 ... Q5SHQ0 23945936
    52 4v8x:BG (3.35) BS03 rna ? GO:0000049 ... Q5SHQ0 23945936
    53 4v8x:BH (3.35) BS01 rna ? GO:0002181 ... P0DOY8 23945936
    54 4v8x:BI (3.35) BS01 rna ? GO:0003735 ... Q5SLQ1 23945936
    55 4v8x:BJ (3.35) BS01 rna N/A N/A N/A 23945936
    56 4v8x:BN (3.35) BS01 rna ? GO:0003729 ... P60488 23945936
    57 4v8x:BO (3.35) BS01 rna ? GO:0003735 ... Q5SHP8 23945936
    58 4v8x:BP (3.35) BS01 rna ? GO:0003735 ... Q5SHQ7 23945936
    59 4v8x:BQ (3.35) BS01 rna ? GO:0000049 ... P60489 23945936
    60 4v8x:BQ (3.35) BS02 rna ? GO:0000049 ... P60489 23945936
    61 4v8x:BR (3.35) BS01 rna ? GO:0003735 ... Q9Z9H5 23945936
    62 4v8x:BS (3.35) BS01 rna ? GO:0003735 ... Q5SHQ4 23945936
    63 4v8x:BS (3.35) BS02 rna ? GO:0003735 ... Q5SHQ4 23945936
    64 4v8x:BT (3.35) BS01 rna ? GO:0003735 ... P60490 23945936
    65 4v8x:BT (3.35) BS02 rna ? GO:0003735 ... P60490 23945936
    66 4v8x:BU (3.35) BS01 rna ? GO:0000027 ... P60491 23945936
    67 4v8x:BV (3.35) BS01 rna ? GO:0003723 ... P60492 23945936
    68 4v8x:BW (3.35) BS01 rna ? GO:0003735 ... Q5SHP3 23945936
    69 4v8x:BX (3.35) BS01 rna ? GO:0000027 ... Q5SHP0 23945936
    70 4v8x:BY (3.35) BS01 rna ? GO:0003723 ... Q5SHP9 23945936
    71 4v8x:BZ (3.35) BS01 rna ? GO:0003723 ... Q5SHZ1 23945936
    72 4v8x:BZ (3.35) BS02 rna ? GO:0003723 ... Q5SHZ1 23945936
    73 4v8x:BZ (3.35) BS03 rna ? GO:0003723 ... Q5SHZ1 23945936
    74 4v8x:CB (3.35) BS01 rna ? GO:0003735 ... P80371 23945936
    75 4v8x:CC (3.35) BS01 rna ? GO:0003676 ... P80372 23945936
    76 4v8x:CD (3.35) BS01 rna ? GO:0003723 ... P80373 23945936
    77 4v8x:CD (3.35) BS02 ZN ? GO:0003723 ... P80373 23945936
    78 4v8x:CE (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 23945936
    79 4v8x:CF (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 23945936
    80 4v8x:CG (3.35) BS01 rna ? GO:0000028 ... P17291 23945936
    81 4v8x:CG (3.35) BS02 rna ? GO:0000028 ... P17291 23945936
    82 4v8x:CH (3.35) BS01 rna ? GO:0003735 ... P0DOY9 23945936
    83 4v8x:CI (3.35) BS01 rna ? GO:0000049 ... P80374 23945936
    84 4v8x:CJ (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 23945936
    85 4v8x:CK (3.35) BS01 rna ? GO:0003735 ... P80376 23945936
    86 4v8x:CL (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 23945936
    87 4v8x:CL (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 23945936
    88 4v8x:CM (3.35) BS01 rna ? GO:0000049 ... P80377 23945936
    89 4v8x:CM (3.35) BS02 rna ? GO:0000049 ... P80377 23945936
    90 4v8x:CM (3.35) BS03 rna ? GO:0000049 ... P80377 23945936
    91 4v8x:CN (3.35) BS01 rna ? GO:0003735 ... P0DOY6 23945936
    92 4v8x:CN (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 23945936
    93 4v8x:CO (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 23945936
    94 4v8x:CO (3.35) BS02 rna ? GO:0003735 ... Q5SJ76 23945936
    95 4v8x:CP (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 23945936
    96 4v8x:CQ (3.35) BS01 rna ? GO:0003735 ... P0DOY7 23945936
    97 4v8x:CR (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 23945936
    98 4v8x:CS (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 23945936
    99 4v8x:CT (3.35) BS01 rna ? GO:0003723 ... P80380 23945936
    100 4v8x:CY (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    101 4v8x:CY (3.35) BS02 rna 3.1.-.- GO:0003723 ... P69348 23945936
    102 4v8x:CY (3.35) BS03 rna 3.1.-.- GO:0003723 ... P69348 23945936
    103 4v8x:CZ (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    104 4v8x:D0 (3.35) BS01 rna ? GO:0003735 ... P60493 23945936
    105 4v8x:D0 (3.35) BS02 rna ? GO:0003735 ... P60493 23945936
    106 4v8x:D0 (3.35) BS03 rna ? GO:0003735 ... P60493 23945936
    107 4v8x:D1 (3.35) BS01 rna ? GO:0003735 ... P60494 23945936
    108 4v8x:D2 (3.35) BS01 rna ? GO:0003735 ... Q5SHP6 23945936
    109 4v8x:D3 (3.35) BS01 rna ? GO:0003735 ... Q5SHQ6 23945936
    110 4v8x:D3 (3.35) BS02 rna ? GO:0003735 ... Q5SHQ6 23945936
    111 4v8x:D4 (3.35) BS01 rna ? GO:0003735 ... Q5SJE1 23945936
    112 4v8x:D5 (3.35) BS01 rna ? GO:0003735 ... P80339 23945936
    113 4v8x:D6 (3.35) BS01 rna ? GO:0000049 ... P35871 23945936
    114 4v8x:D7 (3.35) BS01 rna ? GO:0003735 ... P80340 23945936
    115 4v8x:D8 (3.35) BS01 rna ? GO:0003735 ... Q5SKU1 23945936
    116 4v8x:D9 (3.35) BS01 rna ? GO:0003735 ... Q5SHR2 23945936
    117 4v8x:DC (3.35) BS01 rna ? GO:0000049 ... Q5SLP7 23945936
    118 4v8x:DC (3.35) BS02 rna ? GO:0000049 ... Q5SLP7 23945936
    119 4v8x:DD (3.35) BS01 rna ? GO:0002181 ... P60405 23945936
    120 4v8x:DE (3.35) BS01 rna ? GO:0003735 ... Q5SHN8 23945936
    121 4v8x:DF (3.35) BS01 rna ? GO:0003735 ... Q5SHN9 23945936
    122 4v8x:DF (3.35) BS02 MG ? GO:0003735 ... Q5SHN9 23945936
    123 4v8x:DG (3.35) BS01 rna ? GO:0000049 ... Q5SHQ0 23945936
    124 4v8x:DG (3.35) BS02 rna ? GO:0000049 ... Q5SHQ0 23945936
    125 4v8x:DG (3.35) BS03 rna ? GO:0000049 ... Q5SHQ0 23945936
    126 4v8x:DH (3.35) BS01 rna ? GO:0002181 ... P0DOY8 23945936
    127 4v8x:DI (3.35) BS01 rna ? GO:0003735 ... Q5SLQ1 23945936
    128 4v8x:DI (3.35) BS02 rna ? GO:0003735 ... Q5SLQ1 23945936
    129 4v8x:DJ (3.35) BS01 rna N/A N/A N/A 23945936
    130 4v8x:DN (3.35) BS01 rna ? GO:0003729 ... P60488 23945936
    131 4v8x:DO (3.35) BS01 rna ? GO:0003735 ... Q5SHP8 23945936
    132 4v8x:DO (3.35) BS02 rna ? GO:0003735 ... Q5SHP8 23945936
    133 4v8x:DP (3.35) BS01 rna ? GO:0003735 ... Q5SHQ7 23945936
    134 4v8x:DQ (3.35) BS01 rna ? GO:0000049 ... P60489 23945936
    135 4v8x:DR (3.35) BS01 rna ? GO:0003735 ... Q9Z9H5 23945936
    136 4v8x:DR (3.35) BS02 MG ? GO:0003735 ... Q9Z9H5 23945936
    137 4v8x:DS (3.35) BS01 rna ? GO:0003735 ... Q5SHQ4 23945936
    138 4v8x:DS (3.35) BS02 rna ? GO:0003735 ... Q5SHQ4 23945936
    139 4v8x:DT (3.35) BS01 rna ? GO:0003735 ... P60490 23945936
    140 4v8x:DT (3.35) BS02 rna ? GO:0003735 ... P60490 23945936
    141 4v8x:DU (3.35) BS01 rna ? GO:0000027 ... P60491 23945936
    142 4v8x:DV (3.35) BS01 rna ? GO:0003723 ... P60492 23945936
    143 4v8x:DW (3.35) BS01 rna ? GO:0003735 ... Q5SHP3 23945936
    144 4v8x:DX (3.35) BS01 rna ? GO:0000027 ... Q5SHP0 23945936
    145 4v8x:DY (3.35) BS01 rna ? GO:0003723 ... Q5SHP9 23945936
    146 4v8x:DZ (3.35) BS01 rna ? GO:0003723 ... Q5SHZ1 23945936
    147 4v8x:DZ (3.35) BS02 rna ? GO:0003723 ... Q5SHZ1 23945936
    148 4v8x:DZ (3.35) BS03 MG ? GO:0003723 ... Q5SHZ1 23945936
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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