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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3rqw:A (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605 PDBbind: -logKd/Ki=2.70, Kd=2mM
    2 3rqw:A (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605 PDBbind: -logKd/Ki=2.70, Kd=2mM
    3 3rqw:B (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605 PDBbind: -logKd/Ki=2.70, Kd=2mM
    4 3rqw:B (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605 PDBbind: -logKd/Ki=2.70, Kd=2mM
    5 3rqw:C (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    6 3rqw:C (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    7 3rqw:D (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    8 3rqw:D (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    9 3rqw:E (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    10 3rqw:E (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    11 3rqw:F (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    12 3rqw:F (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    13 3rqw:G (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    14 3rqw:G (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    15 3rqw:H (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    16 3rqw:H (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    17 3rqw:I (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    18 3rqw:I (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    19 3rqw:J (2.913) BS01 ACH ? GO:0004888 ... E0SJQ4 22395605
    20 3rqw:J (2.913) BS02 ACH ? GO:0004888 ... E0SJQ4 22395605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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