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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37201 1ob5:C (3.1) BS05 ENX 3.6.1.48 GO:0003746 ... Q01698 16257965
    37202 1ob5:E (3.1) BS01 rna 3.6.1.48 GO:0003746 ... Q01698 16257965
    37203 1ob5:E (3.1) BS02 rna 3.6.1.48 GO:0003746 ... Q01698 16257965
    37204 1ob5:E (3.1) BS03 GNP 3.6.1.48 GO:0003746 ... Q01698 16257965
    37205 1ob5:E (3.1) BS04 MG 3.6.1.48 GO:0003746 ... Q01698 16257965
    37206 1ob5:E (3.1) BS05 ENX 3.6.1.48 GO:0003746 ... Q01698 16257965
    37207 1oba:A (2.45) BS01 CHT 3.2.1.17 GO:0003796 ... P15057 14527392 MOAD: Kd=3.6mM
    PDBbind: -logKd/Ki=2.44, Kd=3.6mM
    37208 1oba:A (2.45) BS02 CHT 3.2.1.17 GO:0003796 ... P15057 14527392 MOAD: Kd=3.6mM
    PDBbind: -logKd/Ki=2.44, Kd=3.6mM
    37209 1obb:A (1.9) BS01 GLC 3.2.1.20 GO:0003824 ... O33830 12588867
    37210 1obb:A (1.9) BS02 NAD 3.2.1.20 GO:0003824 ... O33830 12588867
    37211 1obb:B (1.9) BS01 GLC 3.2.1.20 GO:0003824 ... O33830 12588867
    37212 1obb:B (1.9) BS02 GLC 3.2.1.20 GO:0003824 ... O33830 12588867
    37213 1obb:B (1.9) BS03 NAD 3.2.1.20 GO:0003824 ... O33830 12588867
    37214 1obc:A (2.1) BS01 LEU 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37215 1obc:A (2.1) BS02 ZN 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37216 1obc:A (2.1) BS03 ZN 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37217 1obc:A (2.1) BS04 NVA 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37218 1obc:A (2.1) BS05 2AD 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37219 1obc:A (2.1) BS06 LMS 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37220 1obd:A (1.4) BS01 ATP 6.3.2.6 GO:0004639 ... P27616 N/A
    37221 1obd:A (1.4) BS02 MG 6.3.2.6 GO:0004639 ... P27616 N/A
    37222 1obd:A (1.4) BS03 AMP 6.3.2.6 GO:0004639 ... P27616 N/A
    37223 1obf:O (1.7) BS01 SO4 1.2.1.- GO:0000166 ... P83696 12777799
    37224 1obf:O (1.7) BS02 SO4 1.2.1.- GO:0000166 ... P83696 12777799
    37225 1obf:P (1.7) BS01 SO4 1.2.1.- GO:0000166 ... P83696 12777799
    37226 1obg:A (2.05) BS01 AMP 6.3.2.6 GO:0004639 ... P27616 N/A
    37227 1obg:A (2.05) BS02 AMP 6.3.2.6 GO:0004639 ... P27616 N/A
    37228 1obg:A (2.05) BS03 MG 6.3.2.6 GO:0004639 ... P27616 N/A
    37229 1obh:A (2.2) BS01 NVA 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37230 1obh:A (2.2) BS02 LMS 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37231 1obh:A (2.2) BS03 NVA 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37232 1obh:A (2.2) BS04 LMS 6.1.1.4 GO:0000166 ... Q72GM3 12718881
    37233 1obm:A (1.85) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 9545280
    37234 1obn:A (1.3) BS01 ASV 1.21.3.1 GO:0005506 ... P05326 12622704
    37235 1obn:A (1.3) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12622704
    37236 1obn:A (1.3) BS03 HOA 1.21.3.1 GO:0005506 ... P05326 12622704
    37237 1obo:A (1.2) BS01 FMN ? GO:0005515 ... P0A3E0 12682068 MOAD: Kd=6.72nM
    37238 1obo:B (1.2) BS01 FMN ? GO:0005515 ... P0A3E0 12682068 MOAD: Kd=6.72nM
    37239 1obr:A (2.3) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 1521526
    37240 1obr:A (2.3) BS02 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    37241 1obr:A (2.3) BS03 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    37242 1obr:A (2.3) BS04 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    37243 1obr:A (2.3) BS05 CA 3.4.17.18 GO:0004181 ... P29068 1521526
    37244 1obt:A (2.8) BS01 AMP 3.2.2.22 GO:0017148 ... P02879 8780513
    37245 1obv:A (2.1) BS01 FMN ? GO:0005515 ... P0A3E0 12682068 MOAD: Kd=1.04nM
    37246 1obw:A (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    37247 1obw:B (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    37248 1obw:C (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    37249 1obx:A (1.35) BS01 peptide ? N/A O00560 12842047
    37250 1oby:A (1.85) BS01 peptide ? N/A O00560 12842047
    37251 1oby:A (1.85) BS02 peptide ? N/A O00560 12842047
    37252 1oby:B (1.85) BS01 peptide ? N/A O00560 12842047
    37253 1oby:B (1.85) BS02 peptide ? N/A O00560 12842047
    37254 1obz:A (1.7) BS01 peptide ? N/A O00560 12842047
    37255 1oc1:A (2.2) BS01 ASV 1.21.3.1 GO:0005506 ... P05326 12622704
    37256 1oc1:A (2.2) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 12622704
    37257 1oc2:A (1.5) BS01 TDX 4.2.1.46 GO:0000166 ... Q8GIP9 14505409
    37258 1oc2:A (1.5) BS02 NAD 4.2.1.46 GO:0000166 ... Q8GIP9 14505409
    37259 1oc2:B (1.5) BS01 NAD 4.2.1.46 GO:0000166 ... Q8GIP9 14505409
    37260 1oc2:B (1.5) BS02 TDX 4.2.1.46 GO:0000166 ... Q8GIP9 14505409
    37261 1oc4:A (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... Q7SI97 12967707
    37262 1oc4:B (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... Q7SI97 12967707
    37263 1oc5:A (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37264 1oc5:A (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37265 1oc7:A (1.11) BS01 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37266 1oc7:A (1.11) BS02 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37267 1oc7:A (1.11) BS03 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37268 1ocb:A (1.75) BS01 GTM 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37269 1ocb:A (1.75) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37270 1ocb:A (1.75) BS03 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37271 1ocb:A (1.75) BS04 GDA 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37272 1ocb:A (1.75) BS05 GTM 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37273 1ocb:A (1.75) BS06 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37274 1ocb:B (1.75) BS01 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37275 1ocb:B (1.75) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37276 1ocb:B (1.75) BS03 GDA 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37277 1ocb:B (1.75) BS04 GTM 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37278 1ocb:B (1.75) BS05 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37279 1ocb:B (1.75) BS06 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37280 1ocb:B (1.75) BS07 FLG 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37281 1occ:A (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 8638158
    37282 1occ:A (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 8638158
    37283 1occ:A (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    37284 1occ:A (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    37285 1occ:B (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    37286 1occ:B (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    37287 1occ:F (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 8638158
    37288 1occ:N (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 8638158
    37289 1occ:N (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 8638158
    37290 1occ:N (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    37291 1occ:N (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 8638158
    37292 1occ:O (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    37293 1occ:O (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 8638158
    37294 1occ:S (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 8638158
    37295 1ocd:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 8823161
    37296 1oce:A (2.7) BS01 MF2 3.1.1.7 GO:0001507 ... P04058 10231521
    37297 1ocj:A (1.3) BS01 MA3 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37298 1ocj:A (1.3) BS02 SGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37299 1ocj:A (1.3) BS03 SSG 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37300 1ocj:A (1.3) BS04 SSG 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37301 1ocj:A (1.3) BS05 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12842048
    37302 1ocm:A (1.9) BS01 POP ? GO:0003824 ... Q9ZIV5 12711609
    37303 1ocm:B (1.9) BS01 POP ? GO:0003824 ... Q9ZIV5 12711609
    37304 1ocn:A (1.31) BS01 IFM 3.2.1.91 GO:0004553 ... Q9C1S9 12744312 PDBbind: -logKd/Ki=6.39, Ki=412nM
    37305 1ocn:A (1.31) BS02 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12744312 PDBbind: -logKd/Ki=6.39, Ki=412nM
    37306 1ocn:A (1.31) BS03 IFM 3.2.1.91 GO:0004553 ... Q9C1S9 12744312 PDBbind: -logKd/Ki=6.39, Ki=412nM
    37307 1ocn:A (1.31) BS04 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12744312 PDBbind: -logKd/Ki=6.39, Ki=412nM
    37308 1oco:A (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    37309 1oco:A (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    37310 1oco:A (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37311 1oco:A (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37312 1oco:A (2.8) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 9624044
    37313 1oco:B (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37314 1oco:B (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37315 1oco:F (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    37316 1oco:N (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    37317 1oco:N (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    37318 1oco:N (2.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37319 1oco:N (2.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37320 1oco:N (2.8) BS05 CMO 7.1.1.9 GO:0004129 ... P00396 9624044
    37321 1oco:O (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37322 1oco:O (2.8) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37323 1oco:S (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    37324 1ocq:A (1.08) BS01 IFM 3.2.1.4 GO:0000272 ... O85465 12812472 PDBbind: -logKd/Ki=5.19, Ki=6.5uM
    37325 1ocq:A (1.08) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 12812472 PDBbind: -logKd/Ki=5.19, Ki=6.5uM
    37326 1ocr:A (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    37327 1ocr:A (2.35) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    37328 1ocr:A (2.35) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37329 1ocr:A (2.35) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37330 1ocr:B (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37331 1ocr:B (2.35) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37332 1ocr:F (2.35) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    37333 1ocr:N (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    37334 1ocr:N (2.35) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    37335 1ocr:N (2.35) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37336 1ocr:N (2.35) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37337 1ocr:O (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37338 1ocr:O (2.35) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37339 1ocr:S (2.35) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    37340 1oct:C (3.0) BS01 dna ? GO:0000981 ... P14859 8156594
    37341 1oct:C (3.0) BS02 dna ? GO:0000981 ... P14859 8156594
    37342 1ocu:A (2.3) BS01 PIB ? GO:0000139 ... Q08826 14514667
    37343 1ocu:B (2.3) BS01 PIB ? GO:0000139 ... Q08826 14514667
    37344 1ocy:A (1.5) BS01 ZN ? GO:0046872 ... P10930 12888344
    37345 1ocz:A (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    37346 1ocz:A (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    37347 1ocz:A (2.9) BS03 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    37348 1ocz:A (2.9) BS04 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    37349 1ocz:A (2.9) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37350 1ocz:A (2.9) BS06 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37351 1ocz:B (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37352 1ocz:B (2.9) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37353 1ocz:F (2.9) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    37354 1ocz:N (2.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 9624044
    37355 1ocz:N (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    37356 1ocz:N (2.9) BS03 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    37357 1ocz:N (2.9) BS04 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    37358 1ocz:N (2.9) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37359 1ocz:N (2.9) BS06 HEA 7.1.1.9 GO:0004129 ... P00396 9624044
    37360 1ocz:O (2.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 9624044
    37361 1ocz:O (2.9) BS02 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37362 1ocz:O (2.9) BS03 CU 7.1.1.9 GO:0004129 ... P68530 9624044
    37363 1ocz:S (2.9) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 9624044
    37364 1od1:A (1.37) BS01 0QS 3.4.23.22 GO:0004190 ... P11838 12777758
    37365 1od2:A (2.7) BS01 ACO 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 12663926
    37366 1od2:B (2.7) BS01 ACO 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 12663926
    37367 1od2:B (2.7) BS02 ADE 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 12663926
    37368 1od3:A (1.0) BS01 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    37369 1od3:A (1.0) BS02 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    37370 1od3:A (1.0) BS03 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    37371 1od3:A (1.0) BS04 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    37372 1od3:A (1.0) BS05 CA 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    37373 1od4:C (2.7) BS01 ADE 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 12663926
    37374 1od5:A (2.1) BS01 CO3 ? GO:0045735 ... P04347 12771376
    37375 1od5:A (2.1) BS02 MG ? GO:0045735 ... P04347 12771376
    37376 1od5:B (2.1) BS01 MG ? GO:0045735 ... P04347 12771376
    37377 1od5:B (2.1) BS02 CO3 ? GO:0045735 ... P04347 12771376
    37378 1od6:A (1.5) BS01 PNS 2.7.7.3 GO:0003824 ... Q5SJS9 14684898
    37379 1od7:A (3.0) BS01 SUW ? N/A Q62230 12737821
    37380 1od8:A (1.05) BS01 XDL 3.2.1.8 GO:0004553 ... P26514 12744311
    37381 1od8:A (1.05) BS02 XYP 3.2.1.8 GO:0004553 ... P26514 12744311
    37382 1od8:A (1.05) BS03 XDL 3.2.1.8 GO:0004553 ... P26514 12744311
    37383 1od8:A (1.05) BS04 XYP 3.2.1.8 GO:0004553 ... P26514 12744311
    37384 1od9:A (2.1) BS01 BND ? N/A Q62230 12737821
    37385 1oda:A (3.31) BS01 BDU ? N/A Q62230 12737821
    37386 1odb:A (2.19) BS01 CA ? GO:0002548 ... P80511 12777802
    37387 1odb:A (2.19) BS02 CA ? GO:0002548 ... P80511 12777802
    37388 1odb:A (2.19) BS03 CU ? GO:0002548 ... P80511 12777802
    37389 1odb:B (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    37390 1odb:B (2.19) BS02 CU ? GO:0002548 ... P80511 12777802
    37391 1odb:B (2.19) BS03 CA ? GO:0002548 ... P80511 12777802
    37392 1odb:B (2.19) BS04 CA ? GO:0002548 ... P80511 12777802
    37393 1odb:C (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    37394 1odb:C (2.19) BS02 CA ? GO:0002548 ... P80511 12777802
    37395 1odb:C (2.19) BS03 CA ? GO:0002548 ... P80511 12777802
    37396 1odb:C (2.19) BS04 CU ? GO:0002548 ... P80511 12777802
    37397 1odb:D (2.19) BS01 CU ? GO:0002548 ... P80511 12777802
    37398 1odb:D (2.19) BS02 CU ? GO:0002548 ... P80511 12777802
    37399 1odb:D (2.19) BS03 CA ? GO:0002548 ... P80511 12777802
    37400 1odb:D (2.19) BS04 CA ? GO:0002548 ... P80511 12777802
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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