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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29401 1lls:A (1.8) BS01 XE ? GO:0005515 ... P0AEX9 12217701
    29402 1llu:A (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29403 1llu:A (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29404 1llu:A (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29405 1llu:A (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29406 1llu:A (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29407 1llu:B (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29408 1llu:B (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29409 1llu:B (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29410 1llu:B (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29411 1llu:C (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29412 1llu:C (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29413 1llu:C (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29414 1llu:C (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29415 1llu:C (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29416 1llu:D (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29417 1llu:D (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29418 1llu:D (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29419 1llu:D (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29420 1llu:E (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29421 1llu:E (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29422 1llu:E (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29423 1llu:E (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29424 1llu:E (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29425 1llu:F (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29426 1llu:F (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29427 1llu:F (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29428 1llu:F (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29429 1llu:G (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29430 1llu:G (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29431 1llu:G (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29432 1llu:G (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29433 1llu:G (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29434 1llu:H (2.3) BS01 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29435 1llu:H (2.3) BS02 ZN 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29436 1llu:H (2.3) BS03 NAD 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29437 1llu:H (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29438 1llw:A (2.7) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 11967268
    29439 1llw:A (2.7) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    29440 1llw:A (2.7) BS03 AKG 1.4.7.1 GO:0006537 ... P55038 11967268
    29441 1llz:A (3.0) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 11967268
    29442 1llz:A (3.0) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    29443 1lm1:A (2.8) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 11967268
    29444 1lm1:A (2.8) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    29445 1lm2:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 12119407
    29446 1lm2:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 12119407
    29447 1lm2:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 12119407
    29448 1lm3:B (2.7) BS01 MG ? GO:0005506 ... P0ABE7 11914078
    29449 1lm3:B (2.7) BS02 HEM ? GO:0005506 ... P0ABE7 11914078
    29450 1lm3:D (2.7) BS01 HEM ? GO:0005506 ... P0ABE7 11914078
    29451 1lm4:A (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    29452 1lm4:B (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    29453 1lm6:A (1.75) BS01 FE 3.5.1.88 GO:0006412 ... Q9F2F0 12823970
    29454 1lm8:V (1.85) BS01 peptide ? N/A P40337 12004076
    29455 1lmb:3 (1.8) BS01 dna ? GO:0003677 ... P03034 1387915
    29456 1lmb:3 (1.8) BS02 dna ? GO:0003677 ... P03034 1387915
    29457 1lmb:4 (1.8) BS01 dna ? GO:0003677 ... P03034 1387915
    29458 1lmb:4 (1.8) BS02 dna ? GO:0003677 ... P03034 1387915
    29459 1lmc:A (2.0) BS01 BUL 3.2.1.17 GO:0003796 ... P11941 15299732
    29460 1lmh:A (1.9) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12048187
    29461 1lmj:A (-1.00) BS01 CA ? GO:0005509 ... P35555 12511552
    29462 1lmj:A (-1.00) BS02 CA ? GO:0005509 ... P35555 12511552
    29463 1lml:A (1.86) BS01 ZN 3.4.24.36 GO:0004222 ... P08148 9739094
    29464 1lms:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 12617658
    29465 1lmw:B (2.5) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 8591045
    29466 1lmw:B (2.5) BS02 0GJ 3.4.21.73 GO:0004252 ... P00749 8591045
    29467 1lmw:D (2.5) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 8591045
    29468 1lmw:D (2.5) BS02 0GJ 3.4.21.73 GO:0004252 ... P00749 8591045
    29469 1ln1:A (2.4) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    29470 1ln2:A (2.9) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    29471 1ln2:B (2.9) BS01 DLP ? GO:0005515 ... Q9UKL6 12055623
    29472 1ln3:A (2.9) BS01 CPL ? GO:0005515 ... Q9UKL6 12055623
    29473 1ln3:B (2.9) BS01 CPL ? GO:0005515 ... Q9UKL6 12055623
    29474 1ln6:A (-1.00) BS01 RET ? GO:0000139 ... P02699 12044163
    29475 1ln8:A (1.65) BS01 CA 3.1.1.4 GO:0004623 ... P60045 N/A
    29476 1lna:E (1.9) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    29477 1lna:E (1.9) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    29478 1lna:E (1.9) BS03 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    29479 1lna:E (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29480 1lna:E (1.9) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29481 1lna:E (1.9) BS06 CO 3.4.24.27 GO:0004222 ... P00800 8535232
    29482 1lna:E (1.9) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29483 1lnb:E (1.8) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    29484 1lnb:E (1.8) BS02 FE 3.4.24.27 GO:0004222 ... P00800 8535232
    29485 1lnb:E (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29486 1lnb:E (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29487 1lnb:E (1.8) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29488 1lnb:E (1.8) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29489 1lnc:E (1.8) BS01 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    29490 1lnc:E (1.8) BS02 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    29491 1lnc:E (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29492 1lnc:E (1.8) BS04 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    29493 1lnc:E (1.8) BS05 MN 3.4.24.27 GO:0004222 ... P00800 8535232
    29494 1lnc:E (1.8) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29495 1lnd:E (1.7) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    29496 1lnd:E (1.7) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    29497 1lnd:E (1.7) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    29498 1lnd:E (1.7) BS04 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    29499 1lnd:E (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29500 1lnd:E (1.7) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29501 1lnd:E (1.7) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29502 1lnd:E (1.7) BS08 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29503 1lne:E (1.7) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    29504 1lne:E (1.7) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    29505 1lne:E (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29506 1lne:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29507 1lnf:E (1.7) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 8535232
    29508 1lnf:E (1.7) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 8535232
    29509 1lnf:E (1.7) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 8535232
    29510 1lnf:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29511 1lnf:E (1.7) BS05 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29512 1lnf:E (1.7) BS06 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29513 1lnf:E (1.7) BS07 CA 3.4.24.27 GO:0004222 ... P00800 8535232
    29514 1lng:A (2.3) BS01 rna ? GO:0003723 ... Q58440 12050674
    29515 1lnh:A (2.6) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 9294864
    29516 1lnl:A (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    29517 1lnl:A (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    29518 1lnl:B (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    29519 1lnl:B (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    29520 1lnl:B (3.3) BS03 CU ? GO:0005344 ... P83040 12767214
    29521 1lnl:C (3.3) BS01 CU ? GO:0005344 ... P83040 12767214
    29522 1lnl:C (3.3) BS02 CU ? GO:0005344 ... P83040 12767214
    29523 1lnl:C (3.3) BS03 CU ? GO:0005344 ... P83040 12767214
    29524 1lnm:A (1.9) BS01 DTX ? GO:0000302 ... P09464 12823976 MOAD: Kd=2nM
    PDBbind: -logKd/Ki=8.70, Kd=2.0nM
    29525 1lnq:A (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29526 1lnq:B (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29527 1lnq:C (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29528 1lnq:D (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29529 1lnq:E (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29530 1lnq:F (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29531 1lnq:G (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29532 1lnq:H (3.3) BS01 CA ? GO:0005886 ... O27564 12037559
    29533 1lnx:A (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    29534 1lnx:B (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    29535 1lnx:C (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    29536 1lnx:D (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    29537 1lnx:E (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    29538 1lnx:E (2.05) BS02 URI ? GO:0000398 ... Q8ZYG5 12649441
    29539 1lnx:F (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    29540 1lnx:G (2.05) BS01 URI ? GO:0000398 ... Q8ZYG5 12649441
    29541 1lny:A (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    29542 1lny:A (2.2) BS02 IMO 6.3.4.4 GO:0000166 ... P28650 12004071
    29543 1lny:A (2.2) BS03 GDP 6.3.4.4 GO:0000166 ... P28650 12004071
    29544 1lny:B (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    29545 1lny:B (2.2) BS02 GDP 6.3.4.4 GO:0000166 ... P28650 12004071
    29546 1lny:B (2.2) BS03 IMO 6.3.4.4 GO:0000166 ... P28650 12004071
    29547 1lnz:A (2.6) BS01 MG 3.6.5.- GO:0000287 ... P20964 12429099
    29548 1lnz:B (2.6) BS01 G4P 3.6.5.- GO:0000287 ... P20964 12429099
    29549 1lo0:H (2.0) BS01 BC1 ? N/A P01865 12093912
    29550 1lo0:Y (2.0) BS01 BC1 ? N/A P01865 12093912
    29551 1lo1:A (-1.00) BS01 dna ? GO:0003700 ... O95718 12654265 PDBbind: Kd=7.1nM
    29552 1lo1:A (-1.00) BS02 dna ? GO:0003700 ... O95718 12654265 PDBbind: Kd=7.1nM
    29553 1lo1:A (-1.00) BS03 ZN ? GO:0003700 ... O95718 12654265
    29554 1lo1:A (-1.00) BS04 ZN ? GO:0003700 ... O95718 12654265
    29555 1lo2:H (2.0) BS01 OX1 ? N/A Q91Z05 12093912
    29556 1lo2:Y (2.0) BS01 OX1 ? N/A Q91Z05 12093912
    29557 1lo3:H (2.3) BS01 AN1 ? N/A Q91Z05 12093912
    29558 1lo3:L (2.3) BS01 AN1 ? GO:0046872 ... Q65ZC0 12093912
    29559 1lo3:X (2.3) BS01 AN1 ? GO:0046872 ... Q65ZC0 12093912
    29560 1lo3:Y (2.3) BS01 AN1 ? N/A Q91Z05 12093912
    29561 1lo5:A (3.2) BS01 peptide ? GO:0006955 ... P01903 12467569
    29562 1lo5:B (3.2) BS01 peptide ? GO:0006955 ... P01911 12467569
    29563 1lo7:A (1.5) BS01 4CO 3.1.2.23 GO:0016787 ... P56653 11997398 MOAD: Kd=0.33uM
    29564 1lo8:A (1.8) BS01 4CA 3.1.2.23 GO:0016787 ... P56653 11997398 MOAD: Ki=0.26uM
    29565 1lo9:A (2.8) BS01 BCA 3.1.2.23 GO:0016787 ... P56653 11997398
    29566 1loa:A (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    29567 1loa:A (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    29568 1loa:A (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    29569 1loa:B (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    29570 1loa:C (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    29571 1loa:C (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    29572 1loa:C (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    29573 1loa:D (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    29574 1loa:E (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    29575 1loa:E (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    29576 1loa:F (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    29577 1loa:G (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    29578 1loa:G (2.2) BS02 CA ? GO:0005515 ... P04122 2091026
    29579 1loa:G (2.2) BS03 MN ? GO:0005515 ... P04122 2091026
    29580 1loa:H (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    29581 1lob:A (2.0) BS01 CA ? GO:0005515 ... P04122 2091026
    29582 1lob:A (2.0) BS02 MN ? GO:0005515 ... P04122 2091026
    29583 1lob:A (2.0) BS03 MMA ? GO:0005515 ... P04122 2091026
    29584 1lob:B (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29585 1lob:C (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    29586 1lob:C (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    29587 1lob:C (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    29588 1lob:D (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29589 1lob:E (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    29590 1lob:E (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    29591 1lob:E (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    29592 1lob:F (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29593 1lob:G (2.0) BS01 MMA ? GO:0005515 ... P04122 2091026
    29594 1lob:G (2.0) BS02 CA ? GO:0005515 ... P04122 2091026
    29595 1lob:G (2.0) BS03 MN ? GO:0005515 ... P04122 2091026
    29596 1lob:H (2.0) BS01 MMA ? GO:0005537 ... P12306 2091026
    29597 1loc:A (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29598 1loc:A (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29599 1loc:A (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29600 1loc:B (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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