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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28801 1lc0:A (1.2) BS02 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28802 1lc1:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    28803 1lc2:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 12764601
    28804 1lc3:A (1.5) BS01 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28805 1lc3:A (1.5) BS02 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28806 1lc3:A (1.5) BS03 PO4 1.3.1.24 GO:0000166 ... P46844 12079357
    28807 1lc3:A (1.5) BS04 NAD 1.3.1.24 GO:0000166 ... P46844 12079357
    28808 1lc3:A (1.5) BS05 NAD 1.3.1.24 GO:0000166 ... P46844 12079357
    28809 1lc5:A (1.46) BS01 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    28810 1lc5:A (1.46) BS02 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    28811 1lc7:A (1.8) BS01 PO4 4.1.1.81 GO:0003824 ... P97084 12119022
    28812 1lc7:A (1.8) BS02 TPO 4.1.1.81 GO:0003824 ... P97084 12119022
    28813 1lc8:A (1.8) BS01 33P 4.1.1.81 GO:0003824 ... P97084 12119022
    28814 1lca:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    28815 1lcb:A (2.5) BS01 TMP 2.1.1.45 GO:0004799 ... P00469 8371269
    28816 1lcb:A (2.5) BS02 DHF 2.1.1.45 GO:0004799 ... P00469 8371269
    28817 1lcc:A (-1.00) BS01 dna ? GO:0003677 ... P03023 8230225
    28818 1lcc:A (-1.00) BS02 dna ? GO:0003677 ... P03023 8230225
    28819 1lcd:A (-1.00) BS01 dna ? GO:0003677 ... P03023 8230225
    28820 1lcd:A (-1.00) BS02 dna ? GO:0003677 ... P03023 8230225
    28821 1lce:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 8371269
    28822 1lce:A (2.5) BS02 TMF 2.1.1.45 GO:0004799 ... P00469 8371269
    28823 1lcf:A (2.0) BS01 CU 3.4.21.- GO:0001503 ... P02788 15299444
    28824 1lcf:A (2.0) BS02 CU 3.4.21.- GO:0001503 ... P02788 15299444
    28825 1lcf:A (2.0) BS03 CO3 3.4.21.- GO:0001503 ... P02788 15299444
    28826 1lcf:A (2.0) BS04 OXL 3.4.21.- GO:0001503 ... P02788 15299444
    28827 1lcj:A (1.8) BS01 peptide 2.7.10.2 N/A P06239 7680435
    28828 1lck:A (2.5) BS01 peptide 2.7.10.2 N/A P06239 7512222
    28829 1lcn:A (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    28830 1lcn:B (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    28831 1lcn:B (1.63) BS02 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    28832 1lco:A (2.9) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    28833 1lco:A (2.9) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28834 1lco:A (2.9) BS03 PPY 1.1.2.3 GO:0016491 ... P00175 7632684
    28835 1lco:B (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28836 1lco:B (2.9) BS02 PPY 1.1.2.3 GO:0016491 ... P00175 7632684
    28837 1lcp:A (1.65) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28838 1lcp:A (1.65) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28839 1lcp:A (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    PDBbind: -logKd/Ki=6.64, Ki=0.23uM
    28840 1lcp:B (1.65) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28841 1lcp:B (1.65) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821
    28842 1lcp:B (1.65) BS03 PLU 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 7619821 MOAD: Ki=0.23uM
    28843 1lct:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 8371268
    28844 1lct:A (2.0) BS02 CO3 3.4.21.- GO:0005576 ... P02788 8371268
    28845 1lcu:A (3.5) BS01 CA 3.6.4.- GO:0000287 ... P68135 11932258
    28846 1lcu:A (3.5) BS02 CA 3.6.4.- GO:0000287 ... P68135 11932258
    28847 1lcu:A (3.5) BS03 ATP 3.6.4.- GO:0000287 ... P68135 11932258
    28848 1lcu:A (3.5) BS04 LAR 3.6.4.- GO:0000287 ... P68135 11932258
    28849 1lcu:B (3.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 11932258
    28850 1lcu:B (3.5) BS02 LAR 3.6.4.- GO:0000287 ... P68135 11932258
    28851 1lcv:A (2.3) BS01 SNR ? GO:0009374 ... P22629 12055191
    28852 1lcv:B (2.3) BS01 SNR ? GO:0009374 ... P22629 12055191
    28853 1lcw:A (2.2) BS01 SHM ? GO:0009374 ... P22629 12055191
    28854 1lcw:B (2.2) BS01 SHM ? GO:0009374 ... P22629 12055191
    28855 1lcz:A (1.95) BS01 BH7 ? GO:0009374 ... P22629 12055191
    28856 1lcz:B (1.95) BS01 BH7 ? GO:0009374 ... P22629 12055191
    28857 1ld3:A (2.6) BS01 ZN 4.99.1.9 GO:0004325 ... P32396 12761666
    28858 1ld7:A (2.0) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12036349
    28859 1ld7:A (2.0) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12036349 BindingDB: Kd=2.0nM
    28860 1ld7:B (2.0) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 12036349
    28861 1ld7:B (2.0) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    28862 1ld7:B (2.0) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12036349
    28863 1ld7:B (2.0) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 12036349
    28864 1ld7:B (2.0) BS05 U66 2.5.1.58 GO:0003824 ... P49356 12036349 MOAD: ic50=1.1nM
    PDBbind: -logKd/Ki=8.96, IC50=1.1nM
    28865 1ld8:A (1.8) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12036349
    28866 1ld8:B (1.8) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 12036349
    28867 1ld8:B (1.8) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    28868 1ld8:B (1.8) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12036349
    28869 1ld8:B (1.8) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 12036349
    28870 1ld8:B (1.8) BS05 U49 2.5.1.58 GO:0003824 ... P49356 12036349 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    28871 1ld9:A (2.4) BS01 peptide ? N/A P01897 9192660
    28872 1ld9:D (2.4) BS01 peptide ? N/A P01897 9192660
    28873 1ldb:A (2.8) BS01 SO4 1.1.1.27 GO:0003824 ... P00344 2330370
    28874 1ldc:A (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28875 1ldc:A (2.9) BS02 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    28876 1ldc:A (2.9) BS03 PYR 1.1.2.3 GO:0016491 ... P00175 7632684
    28877 1ldc:B (2.9) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 7632684
    28878 1ldc:B (2.9) BS02 PYR 1.1.2.3 GO:0016491 ... P00175 7632684
    28879 1lde:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28880 1lde:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28881 1lde:A (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28882 1lde:A (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28883 1lde:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28884 1lde:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28885 1lde:B (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28886 1lde:B (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28887 1lde:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28888 1lde:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28889 1lde:C (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28890 1lde:C (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28891 1lde:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28892 1lde:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28893 1lde:D (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28894 1lde:D (2.5) BS04 FPI 1.1.1.1 GO:0004022 ... P00327 9132002
    28895 1ldg:A (1.74) BS01 NAI 1.1.1.27 GO:0003824 ... Q27743 8901865
    28896 1ldj:B (3.0) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28897 1ldj:B (3.0) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28898 1ldj:B (3.0) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28899 1ldk:C (3.1) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28900 1ldk:C (3.1) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28901 1ldk:C (3.1) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0008270 ... P62877 11961546
    28902 1ldm:A (2.1) BS01 NAD 1.1.1.27 GO:0003824 ... P00341 3430615
    28903 1ldn:A (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28904 1ldn:A (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28905 1ldn:B (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28906 1ldn:B (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28907 1ldn:C (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28908 1ldn:C (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28909 1ldn:D (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28910 1ldn:D (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28911 1ldn:E (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28912 1ldn:E (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28913 1ldn:F (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28914 1ldn:F (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28915 1ldn:G (2.5) BS01 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28916 1ldn:H (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... P00344 1731077
    28917 1ldn:H (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... P00344 1731077
    28918 1ldo:A (2.2) BS01 SNR ? GO:0005576 ... P02701 12055191
    28919 1ldo:B (2.2) BS01 SNR ? GO:0005576 ... P02701 12055191
    28920 1ldp:H (3.1) BS01 peptide ? N/A P01897 9620676
    28921 1ldp:H (3.1) BS02 peptide ? N/A P01897 9620676
    28922 1ldq:A (2.7) BS01 SHM ? GO:0005576 ... P02701 12055191
    28923 1ldq:B (2.7) BS01 SHM ? GO:0005576 ... P02701 12055191
    28924 1ldt:T (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9242660
    28925 1ldy:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28926 1ldy:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28927 1ldy:A (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28928 1ldy:A (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28929 1ldy:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28930 1ldy:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28931 1ldy:B (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28932 1ldy:B (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28933 1ldy:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28934 1ldy:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28935 1ldy:C (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28936 1ldy:C (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28937 1ldy:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28938 1ldy:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9132002
    28939 1ldy:D (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9132002
    28940 1ldy:D (2.5) BS04 CXF 1.1.1.1 GO:0004022 ... P00327 9132002
    28941 1le5:A (2.75) BS01 dna ? GO:0003677 ... Q04207 11970948
    28942 1le5:A (2.75) BS02 dna ? GO:0003677 ... Q04207 11970948
    28943 1le5:B (2.75) BS01 dna ? GO:0003677 ... P25799 11970948
    28944 1le5:B (2.75) BS02 dna ? GO:0003677 ... P25799 11970948
    28945 1le5:E (2.75) BS01 dna ? GO:0003677 ... Q04207 11970948
    28946 1le5:E (2.75) BS02 dna ? GO:0003677 ... Q04207 11970948
    28947 1le5:F (2.75) BS01 dna ? GO:0003677 ... P25799 11970948
    28948 1le5:F (2.75) BS02 dna ? GO:0003677 ... P25799 11970948
    28949 1le6:A (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28950 1le6:B (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28951 1le6:C (1.97) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28952 1le7:A (2.09) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28953 1le7:B (2.09) BS01 CA 3.1.1.4 GO:0001516 ... O15496 12161451
    28954 1le8:A (2.3) BS01 dna ? GO:0000981 ... P0CY10 12121651 PDBbind: Kd=4.51uM
    28955 1le8:A (2.3) BS02 dna ? GO:0000981 ... P0CY10 12121651 PDBbind: Kd=4.51uM
    28956 1le8:B (2.3) BS01 dna ? GO:0003677 ... P0CY08 12121651 PDBbind: Kd=4.51uM
    28957 1le8:B (2.3) BS02 dna ? GO:0003677 ... P0CY08 12121651 PDBbind: Kd=4.51uM
    28958 1le9:A (3.0) BS01 dna ? GO:0003677 ... Q04207 11970948
    28959 1le9:A (3.0) BS02 dna ? GO:0003677 ... Q04207 11970948
    28960 1le9:B (3.0) BS01 dna ? GO:0003677 ... P25799 11970948
    28961 1le9:B (3.0) BS02 dna ? GO:0003677 ... P25799 11970948
    28962 1le9:E (3.0) BS01 dna ? GO:0003677 ... Q04207 11970948
    28963 1le9:E (3.0) BS02 dna ? GO:0003677 ... Q04207 11970948
    28964 1le9:F (3.0) BS01 dna ? GO:0003677 ... P25799 11970948
    28965 1le9:F (3.0) BS02 dna ? GO:0003677 ... P25799 11970948
    28966 1lec:A (2.0) BS01 MN ? GO:0030246 ... P24146 8478943
    28967 1lec:A (2.0) BS02 CA ? GO:0030246 ... P24146 8478943
    28968 1lec:A (2.0) BS03 SO4 ? GO:0030246 ... P24146 8478943
    28969 1led:A (2.0) BS01 GAL ? GO:0030246 ... P24146 8478943
    28970 1led:A (2.0) BS02 FUC ? GO:0030246 ... P24146 8478943
    28971 1led:A (2.0) BS03 FUC ? GO:0030246 ... P24146 8478943
    28972 1led:A (2.0) BS04 FUC ? GO:0030246 ... P24146 8478943
    28973 1led:A (2.0) BS05 MN ? GO:0030246 ... P24146 8478943
    28974 1led:A (2.0) BS06 CA ? GO:0030246 ... P24146 8478943
    28975 1led:A (2.0) BS07 SO4 ? GO:0030246 ... P24146 8478943
    28976 1lee:A (1.9) BS01 R36 3.4.23.39 GO:0004190 ... P46925 12454457 PDBbind: -logKd/Ki=7.74, Ki=18nM
    28977 1leg:A (1.75) BS01 peptide ? N/A P01901 11994422
    28978 1lei:A (2.7) BS01 dna ? GO:0003677 ... Q04207 11970949 PDBbind: Kd=0.8nM
    28979 1lei:A (2.7) BS02 dna ? GO:0003677 ... Q04207 11970949 PDBbind: Kd=0.8nM
    28980 1lei:B (2.7) BS01 dna ? GO:0003677 ... P25799 11970949 PDBbind: Kd=0.8nM
    28981 1lei:B (2.7) BS02 dna ? GO:0003677 ... P25799 11970949 PDBbind: Kd=0.8nM
    28982 1lek:A (2.15) BS01 peptide ? N/A P01901 11994422
    28983 1lek:A (2.15) BS02 FUC ? N/A P01901 11994422
    28984 1lel:A (2.9) BS01 BH7 ? GO:0005576 ... P02701 12055191
    28985 1lel:B (2.9) BS01 BH7 ? GO:0005576 ... P02701 12055191
    28986 1lem:A (3.0) BS01 GLC ? GO:0030246 ... P02870 7696853
    28987 1lem:A (3.0) BS02 CA ? GO:0030246 ... P02870 7696853
    28988 1lem:A (3.0) BS03 MN ? GO:0030246 ... P02870 7696853
    28989 1lem:B (3.0) BS01 GLC ? GO:0030246 ... P02870 7696853
    28990 1len:A (1.8) BS01 PO4 ? GO:0030246 ... P02870 7731952
    28991 1len:A (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    28992 1len:A (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    28993 1len:C (1.8) BS01 PO4 ? GO:0030246 ... P02870 7731952
    28994 1len:C (1.8) BS02 MN ? GO:0030246 ... P02870 7731952
    28995 1len:C (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    28996 1les:A (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    28997 1les:A (1.9) BS02 CA ? GO:0030246 ... P02870 7592736
    28998 1les:A (1.9) BS03 MN ? GO:0030246 ... P02870 7592736
    28999 1les:B (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    29000 1les:C (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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