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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27801 1kx5:E (1.94) BS01 dna ? GO:0000786 ... P84233 12079350
    27802 1kx5:E (1.94) BS02 dna ? GO:0000786 ... P84233 12079350
    27803 1kx5:F (1.94) BS01 dna ? GO:0000786 ... P62799 12079350
    27804 1kx5:F (1.94) BS02 dna ? GO:0000786 ... P62799 12079350
    27805 1kx5:G (1.94) BS01 dna ? GO:0000786 ... P06897 12079350
    27806 1kx5:G (1.94) BS02 dna ? GO:0000786 ... P06897 12079350
    27807 1kx5:H (1.94) BS01 dna ? GO:0000786 ... P02281 12079350
    27808 1kx5:H (1.94) BS02 dna ? GO:0000786 ... P02281 12079350
    27809 1kx7:A (-1.00) BS01 HEC ? GO:0005506 ... O52685 11955059
    27810 1kxg:A (2.0) BS01 MG ? GO:0005164 ... Q9Y275 11862220
    27811 1kxg:F (2.0) BS01 MG ? GO:0005164 ... Q9Y275 11862220
    27812 1kxh:A (2.3) BS01 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    27813 1kxh:A (2.3) BS02 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    27814 1kxh:A (2.3) BS03 AC1 3.2.1.1 GO:0003824 ... P29957 11914073
    27815 1kxh:A (2.3) BS04 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    27816 1kxm:A (1.74) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11967381
    27817 1kxm:A (1.74) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 11967381 MOAD: Kd=0.14mM
    27818 1kxn:A (1.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11967381
    27819 1kxp:A (2.1) BS01 ATP 3.6.4.- GO:0000287 ... P68135 12048248
    27820 1kxq:A (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27821 1kxq:B (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27822 1kxq:C (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27823 1kxq:D (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27824 1kxr:A (2.07) BS01 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27825 1kxr:A (2.07) BS02 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27826 1kxr:B (2.07) BS01 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27827 1kxr:B (2.07) BS02 CA 3.4.22.52 GO:0004198 ... P97571 11893336
    27828 1kxt:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27829 1kxt:C (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27830 1kxt:E (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P00690 11960990
    27831 1ky2:A (1.6) BS01 MG ? GO:0003924 ... P32939 11937061
    27832 1ky2:A (1.6) BS02 GNP ? GO:0003924 ... P32939 11937061
    27833 1ky3:A (1.35) BS01 GDP ? GO:0003924 ... P32939 11937061
    27834 1ky4:A (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27835 1ky4:A (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27836 1ky4:B (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27837 1ky4:B (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27838 1ky4:C (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27839 1ky4:C (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27840 1ky4:D (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27841 1ky4:D (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11927587
    27842 1ky5:A (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27843 1ky5:A (2.8) BS02 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27844 1ky5:A (2.8) BS03 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27845 1ky5:B (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27846 1ky5:B (2.8) BS02 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27847 1ky5:B (2.8) BS03 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27848 1ky5:C (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27849 1ky5:C (2.8) BS02 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27850 1ky5:C (2.8) BS03 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27851 1ky5:D (2.8) BS01 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27852 1ky5:D (2.8) BS02 NAI 3.13.2.1 GO:0001666 ... P10760 11927587
    27853 1ky5:D (2.8) BS03 ADY 3.13.2.1 GO:0001666 ... P10760 11927587
    27854 1ky6:A (2.0) BS01 peptide ? GO:0006886 ... P17427 12057195
    27855 1ky7:A (2.15) BS01 peptide ? GO:0006886 ... P17427 12057195
    27856 1ky8:A (2.4) BS01 NAP 1.2.1.90 GO:0000166 ... O57693 11842090 MOAD: Kd=1uM
    27857 1kya:A (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27858 1kya:A (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27859 1kya:A (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27860 1kya:A (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27861 1kya:A (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27862 1kya:B (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27863 1kya:B (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27864 1kya:B (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27865 1kya:B (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27866 1kya:B (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27867 1kya:C (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27868 1kya:C (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27869 1kya:C (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27870 1kya:C (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27871 1kya:C (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27872 1kya:D (2.4) BS01 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27873 1kya:D (2.4) BS02 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27874 1kya:D (2.4) BS03 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27875 1kya:D (2.4) BS04 CU 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27876 1kya:D (2.4) BS05 XYD 1.10.3.2 GO:0005507 ... Q96UT7 12044164
    27877 1kyd:A (2.0) BS01 peptide ? GO:0006886 ... P17427 12057195
    27878 1kyf:A (1.22) BS01 peptide ? GO:0006886 ... P17427 12057195
    27879 1kyi:A (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27880 1kyi:B (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27881 1kyi:C (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27882 1kyi:D (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27883 1kyi:E (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27884 1kyi:F (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27885 1kyi:G (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27886 1kyi:H (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27887 1kyi:I (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27888 1kyi:J (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27889 1kyi:K (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27890 1kyi:L (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27891 1kyi:M (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27892 1kyi:N (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27893 1kyi:O (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27894 1kyi:P (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27895 1kyi:Q (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27896 1kyi:R (3.1) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12054822
    27897 1kyi:S (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27898 1kyi:T (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27899 1kyi:U (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27900 1kyi:V (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27901 1kyi:W (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27902 1kyi:X (3.1) BS01 ATP ? GO:0005515 ... P43773 12054822
    27903 1kyn:A (3.5) BS01 KTP 3.4.21.20 GO:0002003 ... P08311 11942800 PDBbind: -logKd/Ki=5.39, IC50=4.1uM
    BindingDB: IC50=4100nM
    27904 1kyn:B (3.5) BS01 KTP 3.4.21.20 GO:0002003 ... P08311 11942800 BindingDB: IC50=4100nM
    27905 1kyo:C (2.97) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27906 1kyo:C (2.97) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27907 1kyo:C (2.97) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11880631
    27908 1kyo:D (2.97) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 11880631
    27909 1kyo:E (2.97) BS01 FES 7.1.1.8 GO:0008121 ... P08067 11880631
    27910 1kyo:E (2.97) BS02 SMA 7.1.1.8 GO:0008121 ... P08067 11880631
    27911 1kyo:N (2.97) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27912 1kyo:N (2.97) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 11880631
    27913 1kyo:N (2.97) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11880631
    27914 1kyo:O (2.97) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 11880631
    27915 1kyo:P (2.97) BS01 FES 7.1.1.8 GO:0008121 ... P08067 11880631
    27916 1kyo:W (2.97) BS01 HEC ? GO:0005515 ... P00044 11880631
    27917 1kyq:A (2.2) BS01 NAD 1.3.1.76
    4.99.1.4    		 GO:0000103 ... P15807 11980703
    27918 1kyq:B (2.2) BS01 NAD 1.3.1.76
    4.99.1.4    		 GO:0000103 ... P15807 11980703
    27919 1kyq:C (2.2) BS01 NAD 1.3.1.76
    4.99.1.4    		 GO:0000103 ... P15807 11980703
    27920 1kyr:A (1.5) BS01 CU ? GO:0003674 ... P42212 11929238
    27921 1kys:A (1.44) BS01 ZN ? GO:0003674 ... P42212 11929238
    27922 1kyt:A (1.7) BS01 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27923 1kyt:A (1.7) BS02 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27924 1kyt:A (1.7) BS03 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27925 1kyt:B (1.7) BS01 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27926 1kyt:B (1.7) BS02 CA 3.1.3.18 GO:0000287 ... Q9HLQ2 N/A
    27927 1kyu:A (1.8) BS01 peptide ? GO:0006886 ... P17427 12057195
    27928 1kyv:A (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27929 1kyv:A (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27930 1kyv:B (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27931 1kyv:B (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27932 1kyv:C (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27933 1kyv:C (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27934 1kyv:D (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27935 1kyv:D (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27936 1kyv:E (2.4) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27937 1kyv:E (2.4) BS02 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 12083520 MOAD: Kd=1.2uM
    27938 1kyw:C (2.4) BS01 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27939 1kyw:F (2.4) BS01 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27940 1kyw:F (2.4) BS02 HFL 2.1.1.68 GO:0008168 ... P28002 12084826
    27941 1kyx:A (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27942 1kyx:A (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27943 1kyx:B (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27944 1kyx:B (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27945 1kyx:C (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27946 1kyx:C (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27947 1kyx:D (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27948 1kyx:D (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27949 1kyx:E (2.6) BS01 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27950 1kyx:E (2.6) BS02 CRM 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27951 1kyy:A (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27952 1kyy:A (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27953 1kyy:B (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27954 1kyy:B (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27955 1kyy:C (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27956 1kyy:C (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27957 1kyy:D (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27958 1kyy:D (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27959 1kyy:E (2.4) BS01 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27960 1kyy:E (2.4) BS02 INI 2.5.1.78 GO:0000906 ... Q9UUB1 12083520
    27961 1kyz:A (2.2) BS01 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    27962 1kyz:A (2.2) BS02 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27963 1kyz:C (2.2) BS01 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    27964 1kyz:C (2.2) BS02 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27965 1kyz:E (2.2) BS01 SAH 2.1.1.68 GO:0008168 ... P28002 12084826
    27966 1kyz:E (2.2) BS02 FER 2.1.1.68 GO:0008168 ... P28002 12084826
    27967 1kz8:A (2.0) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12190310
    27968 1kz8:A (2.0) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12190310
    27969 1kz8:A (2.0) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 12190310 BindingDB: IC50=1300nM
    27970 1kz8:A (2.0) BS04 PFE 3.1.3.11 GO:0005737 ... P00636 12190310 MOAD: ic50=0.83uM
    PDBbind: -logKd/Ki=6.08, IC50=0.83uM
    27971 1kz8:F (2.0) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12190310
    27972 1kz8:F (2.0) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12190310
    27973 1kz8:F (2.0) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 12190310 BindingDB: IC50=1300nM
    27974 1kz8:F (2.0) BS04 PFE 3.1.3.11 GO:0005737 ... P00636 12190310 MOAD: ic50=0.83uM
    PDBbind: -logKd/Ki=6.08, IC50=0.83uM
    27975 1kza:1 (1.74) BS01 MAN ? N/A P08661 11850428
    27976 1kza:1 (1.74) BS02 CA ? N/A P08661 11850428
    27977 1kza:1 (1.74) BS03 CA ? N/A P08661 11850428
    27978 1kza:2 (1.74) BS01 MAN ? N/A P08661 11850428
    27979 1kza:2 (1.74) BS02 CA ? N/A P08661 11850428
    27980 1kza:2 (1.74) BS03 CA ? N/A P08661 11850428
    27981 1kzb:1 (1.8) BS01 MAN ? N/A P08661 11850428
    27982 1kzb:1 (1.8) BS02 CA ? N/A P08661 11850428
    27983 1kzb:1 (1.8) BS03 CA ? N/A P08661 11850428
    27984 1kzb:2 (1.8) BS01 MAN ? N/A P08661 11850428
    27985 1kzb:2 (1.8) BS02 CA ? N/A P08661 11850428
    27986 1kzb:2 (1.8) BS03 CA ? N/A P08661 11850428
    27987 1kzc:1 (1.85) BS01 MAN ? N/A P08661 11850428
    27988 1kzc:1 (1.85) BS02 CA ? N/A P08661 11850428
    27989 1kzc:1 (1.85) BS03 CA ? N/A P08661 11850428
    27990 1kzc:2 (1.85) BS01 MAN ? N/A P08661 11850428
    27991 1kzc:2 (1.85) BS02 CA ? N/A P08661 11850428
    27992 1kzc:2 (1.85) BS03 CA ? N/A P08661 11850428
    27993 1kzd:1 (1.9) BS01 CA ? N/A P08661 11850428
    27994 1kzd:1 (1.9) BS02 CA ? N/A P08661 11850428
    27995 1kzd:2 (1.9) BS01 CA ? N/A P08661 11850428
    27996 1kzd:2 (1.9) BS02 CA ? N/A P08661 11850428
    27997 1kze:1 (1.8) BS01 MAN ? N/A P08661 11850428
    27998 1kze:1 (1.8) BS02 CA ? N/A P08661 11850428
    27999 1kze:1 (1.8) BS03 CA ? N/A P08661 11850428
    28000 1kze:2 (1.8) BS01 MAN ? N/A P08661 11850428
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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