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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27201 1kqg:A (2.8) BS03 MGD 1.17.5.3 GO:0008863 ... P24183 11884747
    27202 1kqg:B (2.8) BS01 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27203 1kqg:B (2.8) BS02 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27204 1kqg:B (2.8) BS03 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27205 1kqg:B (2.8) BS04 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27206 1kqg:B (2.8) BS05 HEM 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27207 1kqg:C (2.8) BS01 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27208 1kqg:C (2.8) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27209 1kqg:C (2.8) BS03 HQO 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27210 1kqj:A (1.7) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 11900536
    27211 1kqk:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... O32220 11922674
    27212 1kqm:A (3.0) BS01 MG ? GO:0003774 ... P24733 12297624
    27213 1kqm:A (3.0) BS02 ANP ? GO:0003774 ... P24733 12297624
    27214 1kqm:B (3.0) BS01 MG ? GO:0005509 ... P13543 12297624
    27215 1kqm:C (3.0) BS01 CA ? GO:0005509 ... P07291 12297624
    27216 1kqn:A (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27217 1kqn:B (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27218 1kqn:C (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27219 1kqn:D (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27220 1kqn:E (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27221 1kqn:F (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27222 1kqo:A (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27223 1kqo:B (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27224 1kqo:C (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27225 1kqo:D (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27226 1kqo:E (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27227 1kqo:F (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27228 1kqp:A (1.03) BS01 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    27229 1kqp:A (1.03) BS02 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27230 1kqp:A (1.03) BS03 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    27231 1kqp:A (1.03) BS04 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27232 1kqp:B (1.03) BS01 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27233 1kqp:B (1.03) BS02 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    27234 1kqp:B (1.03) BS03 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27235 1kqp:B (1.03) BS04 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    27236 1kqq:A (-1.00) BS01 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    27237 1kqq:A (-1.00) BS02 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    27238 1kqr:A (1.4) BS01 MNA ? GO:0019028 ... P12473 11867517
    27239 1kqs:1 (3.1) BS01 rna ? GO:0003735 ... P22452 11828326
    27240 1kqs:2 (3.1) BS01 rna ? GO:0000049 ... P32411 11828326
    27241 1kqs:2 (3.1) BS02 MG ? GO:0000049 ... P32411 11828326
    27242 1kqs:A (3.1) BS01 rna ? GO:0002181 ... P20276 11828326
    27243 1kqs:B (3.1) BS01 rna ? GO:0003723 ... P20279 11828326
    27244 1kqs:C (3.1) BS01 rna ? GO:0003723 ... P12735 11828326
    27245 1kqs:D (3.1) BS01 rna ? GO:0000049 ... P14124 11828326
    27246 1kqs:D (3.1) BS02 rna ? GO:0000049 ... P14124 11828326
    27247 1kqs:E (3.1) BS01 rna ? GO:0002181 ... P14135 11828326
    27248 1kqs:F (3.1) BS01 rna ? GO:0001682 ... P12743 11828326
    27249 1kqs:H (3.1) BS01 rna ? GO:0000027 ... P60617 11828326
    27250 1kqs:I (3.1) BS01 rna ? GO:0003729 ... P29198 11828326
    27251 1kqs:J (3.1) BS01 rna ? GO:0003735 ... P22450 11828326
    27252 1kqs:K (3.1) BS01 rna ? GO:0003735 ... P12737 11828326
    27253 1kqs:L (3.1) BS01 rna ? GO:0002181 ... P60618 11828326
    27254 1kqs:M (3.1) BS01 rna ? GO:0000027 ... P14123 11828326
    27255 1kqs:M (3.1) BS02 rna ? GO:0000027 ... P14123 11828326
    27256 1kqs:N (3.1) BS01 rna ? GO:0003723 ... P12733 11828326
    27257 1kqs:O (3.1) BS01 rna ? GO:0003723 ... P14119 11828326
    27258 1kqs:P (3.1) BS01 rna ? GO:0003735 ... P12734 11828326
    27259 1kqs:P (3.1) BS02 rna ? GO:0003735 ... P12734 11828326
    27260 1kqs:Q (3.1) BS01 rna ? GO:0002181 ... P10970 11828326
    27261 1kqs:R (3.1) BS01 rna ? GO:0000027 ... P12732 11828326
    27262 1kqs:S (3.1) BS01 rna ? GO:0002181 ... P10972 11828326
    27263 1kqs:S (3.1) BS02 MG ? GO:0002181 ... P10972 11828326
    27264 1kqs:T (3.1) BS01 rna ? GO:0003735 ... P14116 11828326
    27265 1kqs:U (3.1) BS01 rna ? GO:0003735 ... P10971 11828326
    27266 1kqs:V (3.1) BS01 rna ? GO:0000463 ... P14121 11828326
    27267 1kqs:V (3.1) BS02 rna ? GO:0000463 ... P14121 11828326
    27268 1kqs:W (3.1) BS01 rna ? GO:0002181 ... P18138 11828326
    27269 1kqs:X (3.1) BS01 rna ? GO:0000166 ... P12736 11828326
    27270 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    27271 1kqs:Y (3.1) BS01 rna ? GO:0003735 ... P60619 11828326
    27272 1kqs:Z (3.1) BS01 rna ? GO:0003723 ... P32410 11828326
    27273 1kqu:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    27274 1kqu:A (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    27275 1kqu:A (2.1) BS03 BR4 3.1.1.4 GO:0004623 ... P14555 12616631
    27276 1kqw:A (1.38) BS01 RTL ? GO:0005504 ... Q8UVG6 12162964
    27277 1kr2:A (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27278 1kr2:B (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27279 1kr2:C (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27280 1kr2:D (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27281 1kr2:E (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27282 1kr2:F (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27283 1kr3:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27284 1kr3:A (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27285 1kr3:A (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    27286 1kr3:B (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27287 1kr3:B (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27288 1kr3:B (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    27289 1kr5:A (2.1) BS01 SAH 2.1.1.77 GO:0004719 ... P22061 11792715
    27290 1kr6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27291 1kr6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27292 1kr6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27293 1kr6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27294 1kr6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    27295 1kr6:A (1.8) BS06 DGL 3.4.24.27 GO:0004222 ... P00800 N/A
    27296 1kr7:A (1.5) BS01 HEM ? GO:0005344 ... O76242 12015154
    27297 1kr7:A (1.5) BS02 OXY ? GO:0005344 ... O76242 12015154
    27298 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27299 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27300 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27301 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27302 1kre:A (2.2) BS01 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    27303 1kre:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    27304 1kre:B (2.2) BS02 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    27305 1krf:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    27306 1krf:A (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    27307 1krf:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    27308 1krf:B (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    27309 1krh:A (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    27310 1krh:A (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    27311 1krh:B (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    27312 1krh:B (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    27313 1krj:A (2.0) BS01 K 1.11.1.5 GO:0004601 ... P00431 10608846
    27314 1krj:A (2.0) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 10608846
    27315 1krm:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 12554940
    27316 1krm:A (2.5) BS02 PRH 3.5.4.4 GO:0004000 ... P56658 12554940
    27317 1kro:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27318 1kro:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27319 1kro:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27320 1kro:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27321 1kro:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    27322 1kro:A (1.7) BS06 DTH 3.4.24.27 GO:0004222 ... P00800 N/A
    27323 1krp:A (2.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    27324 1krp:A (2.2) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27325 1krp:A (2.2) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27326 1krr:A (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27327 1krr:A (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27328 1krr:B (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27329 1krr:B (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27330 1krr:C (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27331 1krr:C (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27332 1kru:A (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27333 1kru:A (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27334 1kru:A (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27335 1kru:A (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27336 1kru:A (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27337 1kru:A (2.8) BS06 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27338 1kru:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27339 1kru:B (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27340 1kru:B (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27341 1kru:B (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27342 1kru:B (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27343 1kru:C (2.8) BS01 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27344 1kru:C (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27345 1kru:C (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27346 1kru:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27347 1kru:C (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27348 1krv:A (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27349 1krv:A (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27350 1krv:A (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27351 1krv:A (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27352 1krv:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27353 1krv:B (2.8) BS02 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27354 1krv:B (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27355 1krv:B (2.8) BS04 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27356 1krv:C (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27357 1krv:C (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27358 1krv:C (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27359 1krv:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27360 1krx:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    27361 1ks4:A (2.5) BS01 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    27362 1ks4:A (2.5) BS02 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    27363 1ks4:A (2.5) BS03 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    27364 1ks7:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27365 1ks7:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27366 1ks7:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27367 1ks7:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27368 1ks7:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    27369 1ks7:A (1.7) BS06 DAS 3.4.24.27 GO:0004222 ... P00800 N/A
    27370 1ksc:A (1.55) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    27371 1ksd:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    27372 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    27373 1ksf:X (2.6) BS02 ADP ? GO:0004176 ... P0ABH9 12205096
    27374 1ksf:X (2.6) BS03 ADP ? GO:0004176 ... P0ABH9 12205096
    27375 1ksg:A (2.3) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    27376 1ksg:A (2.3) BS02 GTP ? GO:0003924 ... Q9D0J4 11980706
    27377 1ksh:A (1.8) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    27378 1ksh:A (1.8) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    27379 1ksi:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    27380 1ksi:A (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    27381 1ksi:B (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    27382 1ksi:B (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    27383 1ksj:A (2.6) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    27384 1ksj:A (2.6) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    27385 1ksj:A (2.6) BS03 GTP ? GO:0003924 ... Q9D0J4 11980706
    27386 1ksk:A (2.0) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    27387 1ksl:A (2.1) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    27388 1ksn:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12039587
    27389 1ksn:A (2.1) BS02 FXV 3.4.21.6 GO:0004252 ... P00742 12039587 MOAD: Ki=0.4nM
    PDBbind: -logKd/Ki=9.40, Ki=0.4nM
    27390 1ksp:A (2.3) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    27391 1ksp:A (2.3) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27392 1ksp:A (2.3) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27393 1kss:A (1.8) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    27394 1kss:A (1.8) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    27395 1kss:A (1.8) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    27396 1kss:A (1.8) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    27397 1kss:A (1.8) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    27398 1kss:A (1.8) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    27399 1kss:A (1.8) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    27400 1ksu:A (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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