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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26401 1kfl:B (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26402 1kfl:B (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26403 1kfl:C (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26404 1kfl:C (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26405 1kfl:C (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26406 1kfl:D (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26407 1kfl:D (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26408 1kfl:D (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26409 1kfl:E (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26410 1kfl:E (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26411 1kfl:E (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26412 1kfl:E (2.8) BS04 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26413 1kfl:F (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26414 1kfl:F (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26415 1kfl:F (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26416 1kfl:G (2.8) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26417 1kfl:G (2.8) BS02 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26418 1kfl:G (2.8) BS03 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26419 1kfl:H (2.8) BS01 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26420 1kfl:H (2.8) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26421 1kfl:H (2.8) BS03 PHE 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26422 1kfl:H (2.8) BS04 PEP 2.5.1.54 GO:0003849 ... P0AB91 12126632
    26423 1kfq:A (2.4) BS01 CA 5.4.2.2 GO:0000287 ... P47244 11779235
    26424 1kfq:B (2.4) BS01 CA 5.4.2.2 GO:0000287 ... P47244 11779235
    26425 1kfr:A (1.85) BS01 HEM ? GO:0005344 ... P80721 11914507
    26426 1kfs:A (2.1) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    26427 1kfs:A (2.1) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26428 1kfs:A (2.1) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26429 1kfv:A (2.55) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26430 1kfv:A (2.55) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26431 1kfv:A (2.55) BS03 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 12065399
    26432 1kfv:B (2.55) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26433 1kfv:B (2.55) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 12065399 PDBbind: Kd=6nM
    26434 1kfv:B (2.55) BS03 ZN 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 12065399
    26435 1kfy:A (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    26436 1kfy:A (3.6) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    26437 1kfy:B (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26438 1kfy:B (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26439 1kfy:B (3.6) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26440 1kfy:B (3.6) BS04 BRS 1.3.5.1 GO:0005515 ... P0AC47 11850430 PDBbind: -logKd/Ki=5.28, Ki=5.2uM
    26441 1kfy:C (3.6) BS01 BRS ? GO:0000104 ... P0A8Q0 11850430 PDBbind: -logKd/Ki=5.28, Ki=5.2uM
    26442 1kfy:D (3.6) BS01 BRS ? GO:0000104 ... P0A8Q3 11850430 PDBbind: -logKd/Ki=5.28, Ki=5.2uM
    26443 1kfy:M (3.6) BS01 OAA 1.3.5.1 GO:0000104 ... P00363 11850430
    26444 1kfy:M (3.6) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 11850430
    26445 1kfy:N (3.6) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26446 1kfy:N (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26447 1kfy:N (3.6) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26448 1kfy:N (3.6) BS04 BRS 1.3.5.1 GO:0005515 ... P0AC47 11850430
    26449 1kfy:O (3.6) BS01 BRS ? GO:0000104 ... P0A8Q0 11850430
    26450 1kfy:P (3.6) BS01 BRS ? GO:0000104 ... P0A8Q3 11850430
    26451 1kg0:A (2.65) BS01 peptide ? GO:0006955 ... P01903 11864610
    26452 1kg0:B (2.65) BS01 peptide ? GO:0006955 ... P01911 11864610
    26453 1kg2:A (1.2) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26454 1kg3:A (1.55) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26455 1kg4:A (1.6) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26456 1kg5:A (1.35) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26457 1kg6:A (1.5) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26458 1kg7:A (1.5) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 N/A
    26459 1kg8:A (2.0) BS01 RET ? GO:0005216 ... P02945 11721006
    26460 1kg9:A (1.81) BS01 RET ? GO:0005216 ... P02945 11721006
    26461 1kgb:A (1.65) BS01 RET ? GO:0005216 ... P02945 11721006
    26462 1kgg:A (2.3) BS01 SO4 3.5.2.6 GO:0008800 ... P00807 10436083
    26463 1kgi:A (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26464 1kgi:B (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26465 1kgi:C (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26466 1kgi:D (1.8) BS01 T4A ? GO:0005179 ... P02767 11995998
    26467 1kgj:A (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26468 1kgj:B (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26469 1kgj:C (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26470 1kgj:D (2.3) BS01 FL8 ? GO:0005179 ... P02767 11995999
    26471 1kgl:A (-1.00) BS01 RTL ? GO:0002138 ... P02696 11934897
    26472 1kgn:A (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26473 1kgn:A (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26474 1kgn:B (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26475 1kgn:B (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26476 1kgn:C (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26477 1kgn:C (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26478 1kgn:D (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26479 1kgn:D (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    26480 1kgo:A (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26481 1kgo:A (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26482 1kgo:B (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26483 1kgo:B (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26484 1kgo:C (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26485 1kgo:C (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26486 1kgo:D (2.25) BS01 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26487 1kgo:D (2.25) BS02 FE2 1.17.4.1 GO:0004748 ... O69274 11802741
    26488 1kgp:A (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26489 1kgp:A (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26490 1kgp:B (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26491 1kgp:B (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26492 1kgp:C (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26493 1kgp:C (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26494 1kgp:C (2.0) BS03 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26495 1kgp:D (2.0) BS01 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26496 1kgp:D (2.0) BS02 MN 1.17.4.1 GO:0004748 ... O69274 11802741
    26497 1kgq:A (2.0) BS01 NPI 2.3.1.117 GO:0005737 ... P56220 11910040
    26498 1kgq:A (2.0) BS02 SCO 2.3.1.117 GO:0005737 ... P56220 11910040
    26499 1kgt:A (2.3) BS01 PML 2.3.1.117 GO:0005737 ... P56220 11910040
    26500 1kgt:A (2.3) BS02 SCA 2.3.1.117 GO:0005737 ... P56220 11910040
    26501 1kgu:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    26502 1kgw:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    26503 1kgx:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    26504 1kgz:A (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26505 1kgz:A (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26506 1kgz:A (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26507 1kgz:B (2.4) BS01 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26508 1kgz:B (2.4) BS02 MN 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26509 1kgz:B (2.4) BS03 PRP 2.4.2.18 GO:0000162 ... Q8VP84 12123839
    26510 1kh2:A (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26511 1kh2:B (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26512 1kh2:C (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26513 1kh2:D (2.3) BS01 ATP 6.3.4.5 GO:0000050 ... P59846 11844799
    26514 1kh3:A (2.15) BS01 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26515 1kh3:A (2.15) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26516 1kh3:A (2.15) BS03 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26517 1kh3:B (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26518 1kh3:B (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26519 1kh3:B (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26520 1kh3:C (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26521 1kh3:C (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26522 1kh3:C (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26523 1kh3:D (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    26524 1kh3:D (2.15) BS02 ASP 6.3.4.5 GO:0000050 ... P59846 12684518
    26525 1kh3:D (2.15) BS03 ANP 6.3.4.5 GO:0000050 ... P59846 12684518
    26526 1kh4:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26527 1kh4:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26528 1kh4:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26529 1kh4:A (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26530 1kh4:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26531 1kh4:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26532 1kh4:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26533 1kh4:B (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26534 1kh5:A (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26535 1kh5:A (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26536 1kh5:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26537 1kh5:A (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26538 1kh5:B (2.0) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26539 1kh5:B (2.0) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26540 1kh5:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26541 1kh5:B (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26542 1kh7:A (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26543 1kh7:A (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26544 1kh7:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26545 1kh7:B (2.4) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26546 1kh7:B (2.4) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26547 1kh7:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26548 1kh8:A (2.0) BS01 CS 4.6.1.18 GO:0003676 ... P61823 16199662
    26549 1kh9:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26550 1kh9:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26551 1kh9:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26552 1kh9:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26553 1kh9:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26554 1kh9:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26555 1kh9:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26556 1khb:A (1.854) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    26557 1khe:A (2.4) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    26558 1khf:A (2.02) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    26559 1khf:A (2.02) BS02 PEP 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    26560 1khg:A (2.34) BS01 MN 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P35558 11851336
    26561 1khh:A (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    26562 1khh:B (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    26563 1khj:A (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26564 1khj:A (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26565 1khj:A (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26566 1khj:B (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26567 1khj:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26568 1khj:B (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    26569 1khk:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26570 1khk:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26571 1khk:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26572 1khk:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26573 1khk:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26574 1khk:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    26575 1khl:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26576 1khl:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26577 1khl:A (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26578 1khl:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26579 1khl:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26580 1khl:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    26581 1khn:A (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26582 1khn:A (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26583 1khn:A (2.6) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26584 1khn:B (2.6) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26585 1khn:B (2.6) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26586 1khn:B (2.6) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 11884134
    26587 1kho:A (2.4) BS01 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    26588 1kho:A (2.4) BS02 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    26589 1kho:A (2.4) BS03 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    26590 1kho:B (2.4) BS01 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    26591 1kho:B (2.4) BS02 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    26592 1kho:B (2.4) BS03 ZN 3.1.4.3 GO:0004629 ... Q9RF12 12009886
    26593 1khp:A (2.0) BS01 peptide 3.4.22.2 GO:0006508 ... P00784 15357669
    26594 1khq:A (1.6) BS01 peptide 3.4.22.2 GO:0006508 ... P00784 15357669
    26595 1khr:A (2.8) BS01 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    26596 1khr:A (2.8) BS02 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    26597 1khr:A (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    26598 1khr:A (2.8) BS04 COA 2.3.1.- GO:0016740 ... P50870 11841212
    26599 1khr:B (2.8) BS01 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    26600 1khr:B (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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