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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26001 1kbp:D (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    26002 1kbp:D (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    26003 1kbq:A (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26004 1kbq:A (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26005 1kbq:A (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26006 1kbq:A (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26007 1kbq:B (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26008 1kbq:B (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26009 1kbq:B (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26010 1kbq:B (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26011 1kbq:C (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26012 1kbq:C (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26013 1kbq:C (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26014 1kbq:C (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26015 1kbq:D (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26016 1kbq:D (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26017 1kbq:D (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    26018 1kbq:D (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    26019 1kbu:A (2.2) BS01 dna ? GO:0003677 ... P06956 12051940
    26020 1kbu:B (2.2) BS01 dna ? GO:0003677 ... P06956 12051940
    26021 1kbu:B (2.2) BS02 dna ? GO:0003677 ... P06956 12051940
    26022 1kbv:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26023 1kbv:A (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26024 1kbv:A (1.95) BS03 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26025 1kbv:A (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26026 1kbv:B (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26027 1kbv:B (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26028 1kbv:B (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26029 1kbv:B (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26030 1kbv:C (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26031 1kbv:C (1.95) BS02 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26032 1kbv:C (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26033 1kbv:C (1.95) BS04 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26034 1kbv:D (1.95) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26035 1kbv:D (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26036 1kbv:D (1.95) BS03 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26037 1kbv:D (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26038 1kbv:E (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26039 1kbv:E (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26040 1kbv:E (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26041 1kbv:E (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26042 1kbv:F (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26043 1kbv:F (1.95) BS02 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    26044 1kbv:F (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26045 1kbv:F (1.95) BS04 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26046 1kbw:A (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26047 1kbw:A (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26048 1kbw:B (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26049 1kbw:B (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26050 1kbw:C (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26051 1kbw:C (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26052 1kbw:D (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26053 1kbw:D (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26054 1kbw:E (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26055 1kbw:E (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26056 1kbw:F (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26057 1kbw:F (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    26058 1kby:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 16228547
    26059 1kby:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 16228547
    26060 1kby:L (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 16228547
    26061 1kby:L (2.5) BS04 BPH ? GO:0009772 ... P0C0Y8 16228547
    26062 1kby:L (2.5) BS05 BPH ? GO:0009772 ... P0C0Y8 16228547
    26063 1kby:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 16228547
    26064 1kby:L (2.5) BS07 U10 ? GO:0009772 ... P0C0Y8 16228547
    26065 1kby:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 16228547
    26066 1kby:M (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 16228547
    26067 1kby:M (2.5) BS03 BPH ? GO:0009772 ... P0C0Y9 16228547
    26068 1kby:M (2.5) BS04 BPH ? GO:0009772 ... P0C0Y9 16228547
    26069 1kby:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 16228547
    26070 1kby:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 16228547
    26071 1kby:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 16228547
    26072 1kby:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 16228547
    26073 1kc1:A (2.6) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    26074 1kc2:A (2.1) BS01 peptide 2.7.10.2 N/A P00524 11851339
    26075 1kc3:A (2.7) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    26076 1kc3:A (2.7) BS02 TRH 1.1.1.133 GO:0005829 ... P26392 12057193
    26077 1kc4:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11790782
    26078 1kc5:H (2.5) BS01 peptide ? N/A P01869 11859128
    26079 1kc5:L (2.5) BS01 peptide ? GO:0005576 ... P01837 11859128
    26080 1kc6:A (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26081 1kc6:A (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26082 1kc6:B (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26083 1kc6:B (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26084 1kc6:C (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26085 1kc6:C (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26086 1kc6:D (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26087 1kc6:D (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    26088 1kc7:A (2.2) BS01 MG 2.7.9.1 GO:0003824 ... P22983 11790099
    26089 1kc7:A (2.2) BS02 PPR 2.7.9.1 GO:0003824 ... P22983 11790099 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3uM
    26090 1kc8:1 (3.01) BS01 rna ? GO:0003735 ... P60619 12860128
    26091 1kc8:2 (3.01) BS01 rna ? GO:0003723 ... P32410 12860128
    26092 1kc8:3 (3.01) BS01 rna ? GO:0003735 ... P22452 12860128
    26093 1kc8:4 (3.01) BS01 rna ? GO:0000049 ... P32411 12860128
    26094 1kc8:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    26095 1kc8:C (3.01) BS01 rna ? GO:0002181 ... P20276 12860128
    26096 1kc8:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    26097 1kc8:D (3.01) BS01 rna ? GO:0003723 ... P20279 12860128
    26098 1kc8:E (3.01) BS01 rna ? GO:0003723 ... P12735 12860128
    26099 1kc8:F (3.01) BS01 rna ? GO:0000049 ... P14124 12860128
    26100 1kc8:F (3.01) BS02 rna ? GO:0000049 ... P14124 12860128
    26101 1kc8:G (3.01) BS01 rna ? GO:0002181 ... P14135 12860128
    26102 1kc8:H (3.01) BS01 rna ? GO:0001682 ... P12743 12860128
    26103 1kc8:J (3.01) BS01 rna ? GO:0000027 ... P60617 12860128
    26104 1kc8:K (3.01) BS01 rna ? GO:0003729 ... P29198 12860128
    26105 1kc8:L (3.01) BS01 rna ? GO:0003735 ... P22450 12860128
    26106 1kc8:M (3.01) BS01 rna ? GO:0003735 ... P12737 12860128
    26107 1kc8:N (3.01) BS01 rna ? GO:0002181 ... P60618 12860128
    26108 1kc8:O (3.01) BS01 rna ? GO:0000027 ... P14123 12860128
    26109 1kc8:O (3.01) BS02 rna ? GO:0000027 ... P14123 12860128
    26110 1kc8:P (3.01) BS01 rna ? GO:0003723 ... P12733 12860128
    26111 1kc8:Q (3.01) BS01 rna ? GO:0003723 ... P14119 12860128
    26112 1kc8:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    26113 1kc8:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    26114 1kc8:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    26115 1kc8:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    26116 1kc8:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    26117 1kc8:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    26118 1kc8:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    26119 1kc8:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    26120 1kc8:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    26121 1kc8:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    26122 1kc8:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    26123 1kc8:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    26124 1kc8:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    26125 1kcb:A (1.65) BS01 CU 1.7.2.1 GO:0005507 ... P25006 12615072
    26126 1kcb:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P25006 12615072
    26127 1kcc:A (1.0) BS01 GTR 3.2.1.15 GO:0004650 ... P79074 12022868
    26128 1kcd:A (1.15) BS01 GTK 3.2.1.15 GO:0004650 ... P79074 12022868
    26129 1kcd:A (1.15) BS02 GTR 3.2.1.15 GO:0004650 ... P79074 12022868
    26130 1kce:A (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    26131 1kce:A (2.0) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    26132 1kce:B (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    26133 1kce:B (2.0) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    26134 1kcg:C (2.6) BS01 GSH ? N/A Q9BZM4 11754823
    26135 1kck:A (2.43) BS01 G6D 2.4.1.19 GO:0003824 ... P43379 11696539
    26136 1kck:A (2.43) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26137 1kck:A (2.43) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26138 1kck:A (2.43) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26139 1kck:A (2.43) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26140 1kck:A (2.43) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26141 1kck:A (2.43) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26142 1kck:A (2.43) BS08 ADH 2.4.1.19 GO:0003824 ... P43379 11696539
    26143 1kck:A (2.43) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26144 1kck:A (2.43) BS10 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    26145 1kck:A (2.43) BS11 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    26146 1kcl:A (1.94) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26147 1kcl:A (1.94) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26148 1kcl:A (1.94) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26149 1kcl:A (1.94) BS04 BGC 2.4.1.19 GO:0003824 ... P43379 11696539
    26150 1kcl:A (1.94) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26151 1kcl:A (1.94) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26152 1kcl:A (1.94) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26153 1kcl:A (1.94) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26154 1kcl:A (1.94) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26155 1kcl:A (1.94) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26156 1kcl:A (1.94) BS11 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    26157 1kcl:A (1.94) BS12 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    26158 1kcl:A (1.94) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    26159 1kcr:H (2.9) BS01 peptide ? N/A P01869 11120821
    26160 1kcr:L (2.9) BS01 peptide ? GO:0005576 ... P01837 11120821
    26161 1kcs:H (2.5) BS01 peptide ? GO:0002250 ... P18532 11859128
    26162 1kcs:L (2.5) BS01 peptide ? GO:0005576 ... P01837 11859128
    26163 1kcw:A (3.0) BS01 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26164 1kcw:A (3.0) BS02 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26165 1kcw:A (3.0) BS03 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26166 1kcw:A (3.0) BS04 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26167 1kcw:A (3.0) BS05 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26168 1kcw:A (3.0) BS06 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26169 1kcw:A (3.0) BS07 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26170 1kcw:A (3.0) BS08 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26171 1kcw:A (3.0) BS09 O 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26172 1kcw:A (3.0) BS10 O 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0004322 ... P00450 N/A
    26173 1kcz:A (1.9) BS01 MG 4.3.1.2 GO:0016829 ... Q05514 11748244
    26174 1kcz:B (1.9) BS01 MG 4.3.1.2 GO:0016829 ... Q05514 11748244
    26175 1kd1:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    26176 1kd1:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    26177 1kd1:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    26178 1kd1:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    26179 1kd1:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    26180 1kd1:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    26181 1kd1:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    26182 1kd1:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    26183 1kd1:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    26184 1kd1:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    26185 1kd1:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    26186 1kd1:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    26187 1kd1:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    26188 1kd1:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    26189 1kd1:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    26190 1kd1:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    26191 1kd1:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    26192 1kd1:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    26193 1kd1:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    26194 1kd1:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    26195 1kd1:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    26196 1kd1:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    26197 1kd1:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    26198 1kd1:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    26199 1kd1:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    26200 1kd1:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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