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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25801 1k9m:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    25802 1k9m:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    25803 1k9m:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    25804 1k9m:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    25805 1k9m:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    25806 1k9m:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    25807 1k9m:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    25808 1k9m:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    25809 1k9m:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    25810 1k9m:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    25811 1k9m:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    25812 1k9m:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    25813 1k9m:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    25814 1k9m:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    25815 1k9m:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    25816 1k9m:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    25817 1k9m:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    25818 1k9m:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    25819 1k9m:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    25820 1k9m:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    25821 1k9m:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    25822 1k9m:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    25823 1k9m:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    25824 1k9m:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    25825 1k9m:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    25826 1k9m:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    25827 1k9m:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    25828 1k9m:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    25829 1k9m:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    25830 1k9m:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    25831 1k9m:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    25832 1k9q:A (-1.00) BS01 peptide ? N/A P46937 11743730
    25833 1k9r:A (-1.00) BS01 peptide ? N/A P46937 11743730
    25834 1k9s:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25835 1k9s:A (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    25836 1k9s:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25837 1k9s:B (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25838 1k9s:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25839 1k9s:C (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25840 1k9s:D (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    25841 1k9s:D (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25842 1k9s:D (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25843 1k9s:E (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25844 1k9s:E (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25845 1k9s:E (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25846 1k9s:F (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25847 1k9s:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25848 1k9s:F (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    25849 1k9u:A (1.75) BS01 CA ? GO:0005509 ... O82040 12356717
    25850 1k9u:A (1.75) BS02 CA ? GO:0005509 ... O82040 12356717
    25851 1k9u:B (1.75) BS01 CA ? GO:0005509 ... O82040 12356717
    25852 1k9u:B (1.75) BS02 CA ? GO:0005509 ... O82040 12356717
    25853 1k9y:A (1.9) BS01 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    25854 1k9y:A (1.9) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    25855 1k9y:A (1.9) BS03 AMP 3.1.3.7 GO:0000103 ... P32179 12126627
    25856 1k9z:A (1.5) BS01 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25857 1k9z:A (1.5) BS02 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25858 1k9z:A (1.5) BS03 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25859 1k9z:A (1.5) BS04 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25860 1k9z:A (1.5) BS05 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25861 1k9z:A (1.5) BS06 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    25862 1ka0:A (1.8) BS01 AMP 3.1.3.7 GO:0000103 ... P32179 N/A
    25863 1ka1:A (1.3) BS01 CA 3.1.3.7 GO:0000103 ... P32179 12126627
    25864 1ka1:A (1.3) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    25865 1ka1:A (1.3) BS03 A3P 3.1.3.7 GO:0000103 ... P32179 12126627
    25866 1ka2:A (2.2) BS01 MG 3.4.17.19 GO:0004180 ... Q8U3L0 11839307
    25867 1ka6:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    25868 1ka7:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    25869 1kae:A (1.7) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25870 1kae:A (1.7) BS02 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    25871 1kae:A (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    25872 1kae:B (1.7) BS01 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    25873 1kae:B (1.7) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25874 1kae:B (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    25875 1kah:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25876 1kah:A (2.1) BS02 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    25877 1kah:A (2.1) BS03 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    25878 1kah:B (2.1) BS01 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    25879 1kah:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25880 1kak:A (2.5) BS01 FNP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: ic50=26uM
    PDBbind: -logKd/Ki=4.59, IC50=26uM
    25881 1kao:A (1.7) BS01 GDP 3.6.5.2 GO:0000287 ... P10114 9312017
    25882 1kap:P (1.64) BS01 peptide 3.4.24.40 GO:0001869 ... Q03023 8253063
    25883 1kap:P (1.64) BS02 ZN 3.4.24.40 GO:0001869 ... Q03023 8253063
    25884 1kap:P (1.64) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25885 1kap:P (1.64) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25886 1kap:P (1.64) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25887 1kap:P (1.64) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25888 1kap:P (1.64) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25889 1kap:P (1.64) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25890 1kap:P (1.64) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25891 1kap:P (1.64) BS10 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    25892 1kaq:A (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25893 1kaq:B (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25894 1kaq:C (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25895 1kaq:D (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25896 1kaq:E (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25897 1kaq:F (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    25898 1kar:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25899 1kar:A (2.1) BS02 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    25900 1kar:B (2.1) BS01 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    25901 1kar:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    25902 1kar:B (2.1) BS03 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    25903 1kat:V (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    25904 1kat:V (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    25905 1kat:W (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    25906 1kat:W (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    25907 1kav:A (2.35) BS01 FEP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: Ki=1.5uM
    PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    25908 1kax:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    25909 1kay:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    25910 1kaz:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    25911 1kb0:A (1.44) BS01 CA 1.1.9.1 GO:0005509 ... Q46444 11714714
    25912 1kb0:A (1.44) BS02 HEC 1.1.9.1 GO:0005509 ... Q46444 11714714
    25913 1kb0:A (1.44) BS03 TFB 1.1.9.1 GO:0005509 ... Q46444 11714714
    25914 1kb0:A (1.44) BS04 PQQ 1.1.9.1 GO:0005509 ... Q46444 11714714
    25915 1kb2:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25916 1kb2:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25917 1kb2:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25918 1kb2:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25919 1kb2:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25920 1kb2:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25921 1kb2:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25922 1kb2:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25923 1kb3:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    25924 1kb4:A (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    25925 1kb4:A (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    25926 1kb4:A (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    25927 1kb4:A (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    25928 1kb4:B (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    25929 1kb4:B (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    25930 1kb4:B (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    25931 1kb4:B (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    25932 1kb6:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25933 1kb6:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25934 1kb6:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25935 1kb6:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25936 1kb6:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    25937 1kb6:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    25938 1kb6:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    25939 1kb6:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    25940 1kb9:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    25941 1kb9:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    25942 1kb9:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11726495
    25943 1kb9:C (2.3) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 11726495
    25944 1kb9:C (2.3) BS05 PIE 7.1.1.8 GO:0005739 ... P00163 11726495
    25945 1kb9:C (2.3) BS06 CDL 7.1.1.8 GO:0005739 ... P00163 11726495
    25946 1kb9:D (2.3) BS01 PIE 7.1.1.8 GO:0009055 ... P07143 11726495
    25947 1kb9:D (2.3) BS02 CDL 7.1.1.8 GO:0009055 ... P07143 11726495
    25948 1kb9:D (2.3) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 11726495
    25949 1kb9:E (2.3) BS01 PIE 7.1.1.8 GO:0008121 ... P08067 11726495
    25950 1kb9:E (2.3) BS02 FES 7.1.1.8 GO:0008121 ... P08067 11726495
    25951 1kbb:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    25952 1kbc:A (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25953 1kbc:A (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25954 1kbc:A (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25955 1kbc:A (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25956 1kbc:A (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    25957 1kbc:A (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    25958 1kbc:B (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25959 1kbc:B (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    25960 1kbc:B (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25961 1kbc:B (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    25962 1kbc:B (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    25963 1kbc:B (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    25964 1kbe:A (-1.00) BS01 ZN 2.7.11.1 N/A Q61097 11786023
    25965 1kbe:A (-1.00) BS02 ZN 2.7.11.1 N/A Q61097 11786023
    25966 1kbf:A (-1.00) BS01 ZN 2.7.11.1 N/A Q61097 11786023
    25967 1kbf:A (-1.00) BS02 ZN 2.7.11.1 N/A Q61097 11786023
    25968 1kbg:H (2.2) BS01 peptide ? N/A P01901 10023770
    25969 1kbg:H (2.2) BS02 FUC ? N/A P01901 10023770
    25970 1kbi:A (2.3) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 11914072
    25971 1kbi:A (2.3) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 11914072
    25972 1kbi:B (2.3) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 11914072
    25973 1kbi:B (2.3) BS02 PYR 1.1.2.3 GO:0016491 ... P00175 11914072
    25974 1kbj:A (2.5) BS01 FMN 1.1.2.3 GO:0010181 ... P00175 11914072
    25975 1kbj:B (2.5) BS01 FMN 1.1.2.3 GO:0010181 ... P00175 11914072
    25976 1kbk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    25977 1kbn:A (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    25978 1kbn:B (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    25979 1kbo:A (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25980 1kbo:A (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25981 1kbo:A (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25982 1kbo:A (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25983 1kbo:B (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25984 1kbo:B (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25985 1kbo:B (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25986 1kbo:B (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25987 1kbo:C (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25988 1kbo:C (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25989 1kbo:C (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25990 1kbo:C (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25991 1kbo:D (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25992 1kbo:D (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25993 1kbo:D (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    25994 1kbo:D (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    25995 1kbp:A (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    25996 1kbp:A (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    25997 1kbp:B (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    25998 1kbp:B (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    25999 1kbp:C (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    26000 1kbp:C (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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