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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25601 1k7g:A (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25602 1k7h:A (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25603 1k7h:A (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25604 1k7h:A (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25605 1k7h:B (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25606 1k7h:B (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25607 1k7h:B (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    25608 1k7i:A (1.59) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25609 1k7i:A (1.59) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25610 1k7i:A (1.59) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25611 1k7i:A (1.59) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25612 1k7i:A (1.59) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25613 1k7i:A (1.59) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25614 1k7i:A (1.59) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    25615 1k7i:A (1.59) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25616 1k7l:A (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25617 1k7l:A (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25618 1k7l:C (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25619 1k7l:C (2.5) BS02 peptide ? GO:0003677 ... Q07869 11698662
    25620 1k7l:C (2.5) BS03 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25621 1k7l:E (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25622 1k7l:E (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25623 1k7l:G (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    25624 1k7l:G (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    25625 1k7q:A (1.8) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25626 1k7q:A (1.8) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25627 1k7q:A (1.8) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25628 1k7q:A (1.8) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25629 1k7q:A (1.8) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25630 1k7q:A (1.8) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25631 1k7q:A (1.8) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    25632 1k7q:A (1.8) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    25633 1k7s:N (2.6) BS01 ALB ? GO:0005515 ... P07822 11805094
    25634 1k7w:A (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25635 1k7w:A (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25636 1k7w:B (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25637 1k7w:B (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25638 1k7w:C (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25639 1k7w:C (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25640 1k7w:D (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25641 1k7w:D (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    25642 1k7x:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    25643 1k7y:A (3.0) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    25644 1k81:A (-1.00) BS01 ZN ? GO:0003743 ... Q57562 11980477
    25645 1k82:A (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25646 1k82:A (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25647 1k82:A (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25648 1k82:A (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25649 1k82:B (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25650 1k82:B (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25651 1k82:B (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25652 1k82:B (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25653 1k82:C (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25654 1k82:C (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25655 1k82:C (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25656 1k82:C (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25657 1k82:D (2.1) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25658 1k82:D (2.1) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25659 1k82:D (2.1) BS03 dna 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25660 1k82:D (2.1) BS04 ZN 3.2.2.23
    4.2.99.18    		 GO:0000703 ... P05523 11912217
    25661 1k83:A (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P04050 11805306
    25662 1k83:A (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    25663 1k83:A (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    25664 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0000428 ... P04050 11805306
    25665 1k83:B (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P08518 11805306
    25666 1k83:B (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 11805306
    25667 1k83:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11805306
    25668 1k83:I (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    25669 1k83:I (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    25670 1k83:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11805306
    25671 1k83:L (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11805306
    25672 1k8a:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    25673 1k8a:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    25674 1k8a:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    25675 1k8a:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    25676 1k8a:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    25677 1k8a:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    25678 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    25679 1k8a:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    25680 1k8a:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    25681 1k8a:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    25682 1k8a:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    25683 1k8a:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    25684 1k8a:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    25685 1k8a:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    25686 1k8a:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    25687 1k8a:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    25688 1k8a:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    25689 1k8a:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    25690 1k8a:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    25691 1k8a:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    25692 1k8a:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    25693 1k8a:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    25694 1k8a:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    25695 1k8a:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    25696 1k8a:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    25697 1k8a:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    25698 1k8a:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    25699 1k8a:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    25700 1k8a:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    25701 1k8a:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    25702 1k8a:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    25703 1k8a:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    25704 1k8a:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    25705 1k8a:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    25706 1k8a:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    25707 1k8c:A (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25708 1k8c:B (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25709 1k8c:C (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25710 1k8c:D (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    25711 1k8d:A (2.3) BS01 peptide ? N/A P14429 11738047
    25712 1k8g:A (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    25713 1k8g:B (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    25714 1k8q:A (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    25715 1k8q:B (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    25716 1k8r:A (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11709168
    25717 1k8r:A (3.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 11709168
    25718 1k8w:A (1.85) BS01 rna 5.4.99.25 GO:0000049 ... P60340 11779468
    25719 1k8x:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    25720 1k8y:B (1.5) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    25721 1k8z:A (1.7) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756454
    25722 1k8z:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    25723 1k90:A (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    25724 1k90:B (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    25725 1k90:C (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    25726 1k90:D (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25727 1k90:D (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25728 1k90:E (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25729 1k90:E (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25730 1k90:F (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25731 1k90:F (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25732 1k93:D (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25733 1k93:D (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25734 1k93:E (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25735 1k93:E (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25736 1k93:F (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    25737 1k93:F (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    25738 1k94:A (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    25739 1k94:A (1.7) BS02 CA ? GO:0005509 ... P28676 11717497
    25740 1k94:B (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    25741 1k96:A (1.44) BS01 CA ? GO:0001726 ... P06703 11937060
    25742 1k96:A (1.44) BS02 CA ? GO:0001726 ... P06703 11937060
    25743 1k97:A (2.0) BS01 ASP 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    25744 1k97:A (2.0) BS02 CIR 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    25745 1k98:A (3.75) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    25746 1k9e:A (1.85) BS01 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    25747 1k9f:A (1.75) BS01 XYP 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    25748 1k9f:A (1.75) BS02 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    25749 1k9i:A (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25750 1k9i:A (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25751 1k9i:A (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25752 1k9i:A (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25753 1k9i:A (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25754 1k9i:B (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25755 1k9i:B (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25756 1k9i:B (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25757 1k9i:C (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25758 1k9i:C (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25759 1k9i:C (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25760 1k9i:C (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25761 1k9i:C (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25762 1k9i:D (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25763 1k9i:D (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25764 1k9i:D (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25765 1k9i:D (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25766 1k9i:D (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25767 1k9i:E (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25768 1k9i:E (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25769 1k9i:E (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25770 1k9i:E (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25771 1k9i:F (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25772 1k9i:F (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25773 1k9i:F (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25774 1k9i:G (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25775 1k9i:G (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25776 1k9i:G (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25777 1k9i:H (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    25778 1k9i:H (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    25779 1k9i:H (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25780 1k9i:H (2.5) BS04 CA ? N/A Q9NNX6 11739956
    25781 1k9i:H (2.5) BS05 CA ? N/A Q9NNX6 11739956
    25782 1k9i:I (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25783 1k9i:I (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25784 1k9i:I (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25785 1k9i:J (2.5) BS01 CA ? N/A Q9NNX6 11739956
    25786 1k9i:J (2.5) BS02 CA ? N/A Q9NNX6 11739956
    25787 1k9i:J (2.5) BS03 CA ? N/A Q9NNX6 11739956
    25788 1k9j:A (1.9) BS01 MAN ? N/A Q9H2X3 11739956
    25789 1k9j:A (1.9) BS02 MAN ? N/A Q9H2X3 11739956
    25790 1k9j:A (1.9) BS03 CA ? N/A Q9H2X3 11739956
    25791 1k9j:A (1.9) BS04 CA ? N/A Q9H2X3 11739956
    25792 1k9j:A (1.9) BS05 CA ? N/A Q9H2X3 11739956
    25793 1k9k:A (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    25794 1k9k:A (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    25795 1k9k:B (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    25796 1k9k:B (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    25797 1k9m:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    25798 1k9m:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    25799 1k9m:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    25800 1k9m:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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