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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25001 1jz7:A (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25002 1jz7:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    25003 1jz7:B (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    25004 1jz7:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25005 1jz7:B (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25006 1jz7:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    25007 1jz7:C (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    25008 1jz7:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25009 1jz7:C (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25010 1jz7:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    25011 1jz7:D (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    25012 1jz7:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25013 1jz7:D (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25014 1jz8:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    25015 1jz8:A (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25016 1jz8:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25017 1jz8:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    25018 1jz8:B (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25019 1jz8:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25020 1jz8:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    25021 1jz8:C (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25022 1jz8:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25023 1jz8:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    25024 1jz8:D (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25025 1jz8:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    25026 1jze:A (1.6) BS01 CU ? GO:0005507 ... P00282 11716717
    25027 1jze:A (1.6) BS02 DRU ? GO:0005507 ... P00282 11716717
    25028 1jze:A (1.6) BS03 LRU ? GO:0005507 ... P00282 11716717
    25029 1jzf:A (1.5) BS01 CU ? GO:0005507 ... P00282 11716717
    25030 1jzf:A (1.5) BS02 RTB ? GO:0005507 ... P00282 11716717
    25031 1jzf:A (1.5) BS03 IME ? GO:0005507 ... P00282 11716717
    25032 1jzg:A (1.4) BS01 CU1 ? GO:0005507 ... P00282 11716717
    25033 1jzg:A (1.4) BS02 RTB ? GO:0005507 ... P00282 11716717
    25034 1jzg:A (1.4) BS03 IMF ? GO:0005507 ... P00282 11716717
    25035 1jzh:A (1.7) BS01 CU ? GO:0005507 ... P00282 11716717
    25036 1jzh:A (1.7) BS02 RTA ? GO:0005507 ... P00282 11716717
    25037 1jzi:A (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    25038 1jzi:A (1.62) BS02 REP ? GO:0005507 ... P00282 11716717
    25039 1jzi:A (1.62) BS03 IME ? GO:0005507 ... P00282 11716717
    25040 1jzi:B (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    25041 1jzi:B (1.62) BS02 REP ? GO:0005507 ... P00282 11716717
    25042 1jzj:A (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    25043 1jzj:A (1.8) BS02 DOS ? GO:0005507 ... P00282 11716717
    25044 1jzj:A (1.8) BS03 IME ? GO:0005507 ... P00282 11716717
    25045 1jzj:B (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    25046 1jzj:B (1.8) BS02 DOS ? GO:0005507 ... P00282 11716717
    25047 1jzj:B (1.8) BS03 LOS ? GO:0005507 ... P00282 11716717
    25048 1jzk:A (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    25049 1jzk:A (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    25050 1jzk:B (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    25051 1jzk:C (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    25052 1jzk:C (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    25053 1jzk:D (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    25054 1jzk:D (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    25055 1jzl:A (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    25056 1jzl:A (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    25057 1jzl:B (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    25058 1jzl:B (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    25059 1jzm:A (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    25060 1jzm:A (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    25061 1jzm:B (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    25062 1jzm:B (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    25063 1jzn:A (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    25064 1jzn:A (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    25065 1jzn:B (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    25066 1jzn:B (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    25067 1jzn:C (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    25068 1jzn:C (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    25069 1jzn:D (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    25070 1jzn:D (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    25071 1jzn:E (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    25072 1jzn:E (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    25073 1jzq:A (3.0) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    25074 1jzq:A (3.0) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    25075 1jzq:A (3.0) BS03 ILA 6.1.1.5 GO:0000049 ... P56690 11584022
    25076 1jzr:A (2.9) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25077 1jzr:C (2.9) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25078 1jzs:A (2.5) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    25079 1jzs:A (2.5) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    25080 1jzs:A (2.5) BS03 MRC 6.1.1.5 GO:0000049 ... P56690 11584022 MOAD: Ki=0.25uM
    PDBbind: -logKd/Ki=6.60, Ki=0.25uM
    25081 1jzw:A (1.76) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    25082 1jzw:A (1.76) BS02 SO3 1.20.4.1 GO:0008794 ... P08692 11709171
    25083 1jzx:K (3.1) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    25084 1jzx:L (3.1) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    25085 1jzx:M (3.1) BS01 rna ? GO:0003735 ... P49228 11677599
    25086 1jzy:K (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    25087 1jzy:L (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    25088 1jzy:M (3.5) BS01 rna ? GO:0003735 ... P49228 11677599
    25089 1jzz:K (3.8) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    25090 1jzz:L (3.8) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    25091 1jzz:M (3.8) BS01 rna ? GO:0003735 ... P49228 11677599
    25092 1k01:K (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    25093 1k01:L (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    25094 1k01:M (3.5) BS01 rna ? GO:0003735 ... P49228 11677599
    25095 1k02:A (2.7) BS01 FMN 1.6.99.1 GO:0003959 ... Q02899 11668181
    25096 1k03:A (2.7) BS01 FMN 1.6.99.1 GO:0003959 ... Q02899 11668181
    25097 1k03:A (2.7) BS02 HBA 1.6.99.1 GO:0003959 ... Q02899 11668181 PDBbind: -logKd/Ki=6.00, Kd=1uM
    25098 1k06:A (1.8) BS01 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    25099 1k06:A (1.8) BS02 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    25100 1k06:A (1.8) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 11895439
    25101 1k07:A (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    25102 1k07:A (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    25103 1k07:B (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    25104 1k07:B (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    25105 1k08:A (2.26) BS01 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    25106 1k08:A (2.26) BS02 BZD 2.4.1.1 GO:0000166 ... P00489 11895439 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4600nM
    25107 1k08:A (2.26) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 11895439
    25108 1k0a:A (2.5) BS01 GTX 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25109 1k0a:B (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25110 1k0b:A (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25111 1k0b:C (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25112 1k0c:A (2.5) BS01 GTB 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25113 1k0c:B (2.5) BS01 GTB 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25114 1k0c:C (2.5) BS01 GTB 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25115 1k0c:D (2.5) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25116 1k0d:A (2.2) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25117 1k0d:B (2.2) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25118 1k0d:C (2.2) BS01 GSH 1.11.1.9
    1.8.4.-
    GO:0003714 ... P23202 11695904
    25119 1k0e:A (2.0) BS01 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    25120 1k0e:B (2.0) BS01 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    25121 1k0g:A (2.05) BS01 PO4 2.6.1.85 GO:0000162 ... P05041 11841211
    25122 1k0g:A (2.05) BS02 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    25123 1k0g:B (2.05) BS01 PO4 2.6.1.85 GO:0000162 ... P05041 11841211
    25124 1k0g:B (2.05) BS02 TRP 2.6.1.85 GO:0000162 ... P05041 11841211
    25125 1k0i:A (1.8) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 11805318
    25126 1k0j:A (2.2) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 11805318
    25127 1k0j:A (2.2) BS02 NDP 1.14.13.2 GO:0004497 ... P20586 11805318 MOAD: Ki=1.1mM
    25128 1k0l:A (2.0) BS01 SO3 1.14.13.2 GO:0004497 ... P20586 11805318
    25129 1k0l:A (2.0) BS02 FAD 1.14.13.2 GO:0004497 ... P20586 11805318
    25130 1k0n:A (1.8) BS01 GSH ? GO:0005254 ... O00299 11551966
    25131 1k0t:A (-1.00) BS01 SF4 1.97.1.12 GO:0009055 ... P31087 11941504
    25132 1k0t:A (-1.00) BS02 SF4 1.97.1.12 GO:0009055 ... P31087 11941504
    25133 1k0u:A (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25134 1k0u:A (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25135 1k0u:A (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25136 1k0u:B (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25137 1k0u:B (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25138 1k0u:B (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25139 1k0u:C (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25140 1k0u:C (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25141 1k0u:C (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25142 1k0u:D (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25143 1k0u:D (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25144 1k0u:D (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25145 1k0u:E (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25146 1k0u:E (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25147 1k0u:E (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25148 1k0u:F (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25149 1k0u:F (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25150 1k0u:F (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25151 1k0u:G (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25152 1k0u:G (3.0) BS02 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25153 1k0u:G (3.0) BS03 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25154 1k0u:H (3.0) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25155 1k0u:H (3.0) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 11741948
    25156 1k0u:H (3.0) BS03 DEA 3.13.2.1 GO:0001666 ... P10760 11741948 BindingDB: IC50=30nM
    25157 1k0v:A (-1.00) BS01 CU1 ? GO:0005507 ... O32221 11747441
    25158 1k0w:A (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    25159 1k0w:B (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    25160 1k0w:C (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    25161 1k0w:D (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    25162 1k0w:E (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    25163 1k0w:F (2.1) BS01 ZN 5.1.3.4 GO:0003824 ... P08203 11732895
    25164 1k0y:A (1.87) BS01 HEM ? GO:0004601 ... P69905 11914488
    25165 1k0y:A (1.87) BS02 CNO ? GO:0004601 ... P69905 11914488
    25166 1k0y:A (1.87) BS03 CNO ? GO:0004601 ... P69905 11914488
    25167 1k0y:B (1.87) BS01 HEM ? GO:0004601 ... P68871 11914488
    25168 1k0y:B (1.87) BS02 CNO ? GO:0004601 ... P68871 11914488
    25169 1k0y:C (1.87) BS01 HEM ? GO:0004601 ... P69905 11914488
    25170 1k0y:C (1.87) BS02 CNO ? GO:0004601 ... P69905 11914488
    25171 1k0y:C (1.87) BS03 CNO ? GO:0004601 ... P69905 11914488
    25172 1k0y:D (1.87) BS01 HEM ? GO:0004601 ... P68871 11914488
    25173 1k0y:D (1.87) BS02 CNO ? GO:0004601 ... P68871 11914488
    25174 1k0y:D (1.87) BS03 CNO ? GO:0004601 ... P68871 11914488
    25175 1k12:A (1.9) BS01 FUC ? GO:0001868 ... Q7SIC1 12091873
    25176 1k12:A (1.9) BS02 CA ? GO:0001868 ... Q7SIC1 12091873
    25177 1k1d:A (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25178 1k1d:A (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25179 1k1d:B (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25180 1k1d:B (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25181 1k1d:C (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25182 1k1d:C (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25183 1k1d:D (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25184 1k1d:D (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25185 1k1d:E (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25186 1k1d:E (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25187 1k1d:F (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25188 1k1d:F (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25189 1k1d:G (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25190 1k1d:G (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25191 1k1d:H (3.01) BS01 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25192 1k1d:H (3.01) BS02 ZN 3.5.2.- GO:0005737 ... Q45515 12135362
    25193 1k1e:A (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    25194 1k1e:B (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    25195 1k1e:C (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    25196 1k1e:D (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    25197 1k1e:E (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    25198 1k1e:F (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    25199 1k1e:G (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514
    25200 1k1e:H (1.67) BS01 CO 3.1.3.45 GO:0009103 ... P45314 11835514

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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