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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24801 1jym:D (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24802 1jym:E (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24803 1jym:F (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24804 1jym:G (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24805 1jym:H (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24806 1jym:I (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24807 1jym:J (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24808 1jyn:A (1.8) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 11732897
    24809 1jyn:A (1.8) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24810 1jyn:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24811 1jyn:A (1.8) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24812 1jyn:A (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24813 1jyn:A (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24814 1jyn:A (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24815 1jyn:A (1.8) BS08 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24816 1jyn:B (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24817 1jyn:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24818 1jyn:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24819 1jyn:B (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24820 1jyn:B (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24821 1jyn:B (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24822 1jyn:B (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24823 1jyn:C (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24824 1jyn:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24825 1jyn:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24826 1jyn:C (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24827 1jyn:C (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24828 1jyn:C (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24829 1jyn:C (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24830 1jyn:D (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    24831 1jyn:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24832 1jyn:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24833 1jyn:D (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24834 1jyn:D (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24835 1jyn:D (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24836 1jyq:A (2.0) BS01 peptide ? N/A P62993 11827484
    24837 1jyq:B (2.0) BS01 peptide ? N/A P62993 11827484
    24838 1jyr:A (1.55) BS01 peptide ? N/A P62993 11827484
    24839 1jys:A (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    24840 1jys:B (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    24841 1jyv:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24842 1jyv:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24843 1jyv:A (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24844 1jyv:A (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24845 1jyv:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24846 1jyv:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24847 1jyv:B (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24848 1jyv:B (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24849 1jyv:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24850 1jyv:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24851 1jyv:C (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24852 1jyv:C (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24853 1jyv:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24854 1jyv:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24855 1jyv:D (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24856 1jyv:D (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    24857 1jyw:A (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24858 1jyw:A (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24859 1jyw:A (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24860 1jyw:B (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24861 1jyw:B (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24862 1jyw:B (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24863 1jyw:C (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24864 1jyw:C (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24865 1jyw:C (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24866 1jyw:D (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    24867 1jyw:D (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24868 1jyw:D (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24869 1jyx:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24870 1jyx:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24871 1jyx:A (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24872 1jyx:A (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24873 1jyx:A (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24874 1jyx:A (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24875 1jyx:A (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24876 1jyx:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24877 1jyx:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24878 1jyx:B (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24879 1jyx:B (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24880 1jyx:B (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24881 1jyx:B (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24882 1jyx:B (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24883 1jyx:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24884 1jyx:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24885 1jyx:C (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24886 1jyx:C (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24887 1jyx:C (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24888 1jyx:C (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24889 1jyx:C (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24890 1jyx:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24891 1jyx:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24892 1jyx:D (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24893 1jyx:D (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24894 1jyx:D (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24895 1jyx:D (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24896 1jyx:D (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    24897 1jz2:A (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24898 1jz2:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24899 1jz2:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24900 1jz2:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24901 1jz2:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24902 1jz2:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24903 1jz2:B (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24904 1jz2:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24905 1jz2:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24906 1jz2:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24907 1jz2:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24908 1jz2:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24909 1jz2:C (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24910 1jz2:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24911 1jz2:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24912 1jz2:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24913 1jz2:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24914 1jz2:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24915 1jz2:D (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24916 1jz2:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24917 1jz2:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24918 1jz2:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24919 1jz2:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24920 1jz2:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24921 1jz3:A (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24922 1jz3:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24923 1jz3:A (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24924 1jz3:B (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24925 1jz3:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24926 1jz3:B (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24927 1jz3:C (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24928 1jz3:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24929 1jz3:C (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24930 1jz3:D (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24931 1jz3:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24932 1jz3:D (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24933 1jz4:A (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24934 1jz4:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24935 1jz4:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24936 1jz4:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24937 1jz4:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24938 1jz4:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24939 1jz4:A (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24940 1jz4:B (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24941 1jz4:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24942 1jz4:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24943 1jz4:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24944 1jz4:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24945 1jz4:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24946 1jz4:B (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24947 1jz4:C (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24948 1jz4:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24949 1jz4:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24950 1jz4:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24951 1jz4:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24952 1jz4:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24953 1jz4:C (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24954 1jz4:D (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    24955 1jz4:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24956 1jz4:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24957 1jz4:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24958 1jz4:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24959 1jz4:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24960 1jz5:A (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24961 1jz5:A (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24962 1jz5:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24963 1jz5:B (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24964 1jz5:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24965 1jz5:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24966 1jz5:C (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24967 1jz5:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24968 1jz5:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24969 1jz5:D (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    24970 1jz5:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24971 1jz5:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24972 1jz6:A (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24973 1jz6:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24974 1jz6:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24975 1jz6:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24976 1jz6:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24977 1jz6:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24978 1jz6:A (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24979 1jz6:B (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24980 1jz6:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24981 1jz6:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24982 1jz6:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24983 1jz6:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24984 1jz6:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24985 1jz6:B (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24986 1jz6:C (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24987 1jz6:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24988 1jz6:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24989 1jz6:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24990 1jz6:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24991 1jz6:C (2.1) BS06 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24992 1jz6:D (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    24993 1jz6:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24994 1jz6:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    24995 1jz6:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24996 1jz6:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24997 1jz6:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24998 1jz7:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    24999 1jz7:A (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    25000 1jz7:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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