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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24001 1jmc:A (2.4) BS01 dna ? GO:0003676 ... P27694 8990123
    24002 1jme:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695889
    24003 1jme:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695889
    24004 1jmf:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716 MOAD: Kd=1.7uM
    PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    24005 1jmg:A (2.2) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716 MOAD: Kd=0.85uM
    PDBbind: -logKd/Ki=6.07, Kd=0.85uM
    24006 1jmh:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716
    24007 1jmi:A (2.5) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 9514716 MOAD: Kd=0.87uM
    PDBbind: -logKd/Ki=6.06, Kd=0.87uM
    24008 1jmj:A (2.35) BS01 CA ? GO:0004866 ... P05546 12169660
    24009 1jml:A (1.9) BS01 ZN ? N/A Q51912 11526208
    24010 1jml:A (1.9) BS02 ZN ? N/A Q51912 11526208
    24011 1jml:A (1.9) BS03 ZN ? N/A Q51912 11526208
    24012 1jmq:A (-1.00) BS01 peptide ? N/A P46937 11743730
    24013 1jms:A (2.36) BS01 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 11823435
    24014 1jmt:A (2.2) BS01 peptide ? GO:0000398 ... Q01081 11551507
    24015 1jmu:G (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    24016 1jmu:H (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    24017 1jmu:I (2.8) BS01 ZN ? GO:0003723 ... P07939 11832217
    24018 1jmx:A (1.9) BS01 HEC ? GO:0009055 ... Q8VW85 11704672
    24019 1jmx:A (1.9) BS02 HEC ? GO:0009055 ... Q8VW85 11704672
    24020 1jmx:B (1.9) BS01 HEC ? N/A Q8VW82 11704672
    24021 1jmz:A (2.0) BS01 HEC ? GO:0009055 ... Q8VW85 11704672
    24022 1jmz:A (2.0) BS02 HEC ? GO:0009055 ... Q8VW85 11704672
    24023 1jmz:B (2.0) BS01 HEC ? N/A Q8VW82 11704672
    24024 1jmz:B (2.0) BS02 PND ? N/A Q8VW82 11704672
    24025 1jmz:G (2.0) BS01 PND 1.4.9.- GO:0016491 ... P0A182 11704672
    24026 1jn0:A (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    24027 1jn0:B (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    24028 1jn0:O (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    24029 1jn1:A (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    24030 1jn1:B (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    24031 1jn1:C (2.9) BS01 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    24032 1jn1:C (2.9) BS02 CO 4.6.1.12 GO:0008299 ... P44815 12211023
    24033 1jn2:P (1.9) BS01 CA ? GO:0030246 ... P02866 11504727
    24034 1jn2:P (1.9) BS02 MN ? GO:0030246 ... P02866 11504727
    24035 1jn2:P (1.9) BS03 SFP ? GO:0030246 ... P02866 11504727 MOAD: Ka=12200M^-1
    PDBbind: -logKd/Ki=4.09, Kd=82uM
    24036 1jn4:A (1.8) BS01 139 4.6.1.18 GO:0003676 ... P61823 11513604 MOAD: Ki=11.3uM
    PDBbind: -logKd/Ki=4.95, Ki=11.3uM
    24037 1jn5:B (2.8) BS01 peptide ? GO:0005634 ... Q9UBU9 11583626
    24038 1jn7:A (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 12110675
    24039 1jn9:A (2.3) BS01 CA 3.4.19.5 GO:0016787 ... P37595 18323626
    24040 1jne:A (1.7) BS01 MAN ? GO:0005576 ... Q9V3D4 11821393
    24041 1jnf:A (2.6) BS01 CO3 ? GO:0005576 ... P19134 11752780
    24042 1jnf:A (2.6) BS02 CO3 ? GO:0005576 ... P19134 11752780
    24043 1jnf:A (2.6) BS03 FE ? GO:0005576 ... P19134 11752780
    24044 1jnf:A (2.6) BS04 FE ? GO:0005576 ... P19134 11752780
    24045 1jnh:A (2.85) BS01 ECO ? GO:0003823 ... P01843 11812141
    24046 1jnh:B (2.85) BS01 ECO N/A N/A N/A 11812141
    24047 1jnh:D (2.85) BS01 ECO N/A N/A N/A 11812141
    24048 1jnh:D (2.85) BS02 ECO N/A N/A N/A 11812141
    24049 1jnh:E (2.85) BS01 ECO ? GO:0003823 ... P01843 11812141
    24050 1jnh:F (2.85) BS01 ECO N/A N/A N/A 11812141
    24051 1jnh:F (2.85) BS02 ECO N/A N/A N/A 11812141
    24052 1jnh:H (2.85) BS01 ECO N/A N/A N/A 11812141
    24053 1jni:A (1.25) BS01 HEC ? GO:0009061 ... P44654 11939777
    24054 1jni:A (1.25) BS02 HEC ? GO:0009061 ... P44654 11939777
    24055 1jnk:A (2.3) BS01 ANP 2.7.11.24 GO:0000165 ... P53779 9739089
    24056 1jnm:A (2.2) BS01 dna ? GO:0003677 ... P05412 N/A
    24057 1jnm:A (2.2) BS02 dna ? GO:0003677 ... P05412 N/A
    24058 1jnm:B (2.2) BS01 dna ? GO:0003677 ... P05412 N/A
    24059 1jnm:B (2.2) BS02 dna ? GO:0003677 ... P05412 N/A
    24060 1jnn:H (3.2) BS01 EST ? N/A Q99LC4 11812141
    24061 1jnn:L (3.2) BS01 EST ? N/A Q7TS98 11812141
    24062 1jnq:A (2.1) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 12964012
    24063 1jnq:A (2.1) BS02 EGT 1.13.11.58 GO:0005737 ... P09186 12964012
    24064 1jnr:A (1.6) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    24065 1jnr:B (1.6) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24066 1jnr:B (1.6) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24067 1jnr:C (1.6) BS01 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    24068 1jnr:D (1.6) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24069 1jnr:D (1.6) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24070 1jnu:A (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    24071 1jnu:B (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    24072 1jnu:C (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    24073 1jnu:D (2.6) BS01 FMN 2.7.11.1 N/A Q9ZWQ6 12034897
    24074 1jnw:A (2.07) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 11786019
    24075 1jnw:A (2.07) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 11786019
    24076 1jnw:A (2.07) BS03 PLP 1.4.3.5 GO:0004733 ... P0AFI7 11786019
    24077 1jny:A (1.8) BS01 GDP ? GO:0003746 ... P35021 11574461
    24078 1jny:B (1.8) BS01 GDP ? GO:0003746 ... P35021 11574461
    24079 1jnz:A (2.5) BS01 SO3 1.8.99.2 GO:0000104 ... O28603 11842205
    24080 1jnz:A (2.5) BS02 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    24081 1jnz:B (2.5) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24082 1jnz:B (2.5) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24083 1jnz:C (2.5) BS01 SO3 1.8.99.2 GO:0000104 ... O28603 11842205
    24084 1jnz:C (2.5) BS02 FAD 1.8.99.2 GO:0000104 ... O28603 11842205
    24085 1jnz:D (2.5) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24086 1jnz:D (2.5) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 11842205
    24087 1joa:A (2.8) BS01 FAD 1.11.1.1 GO:0004601 ... P37062 8756456
    24088 1job:A (2.4) BS01 ZN ? GO:0005634 ... Q64288 12054872
    24089 1job:A (2.4) BS02 ZN ? GO:0005634 ... Q64288 12054872
    24090 1joc:A (2.2) BS01 ZN ? GO:0046872 ... Q15075 11741531
    24091 1joc:A (2.2) BS02 ZN ? GO:0046872 ... Q15075 11741531
    24092 1joc:A (2.2) BS03 ITP ? GO:0046872 ... Q15075 11741531 MOAD: Kd=24uM
    PDBbind: -logKd/Ki=4.62, Kd=24uM
    24093 1joc:B (2.2) BS01 ZN ? GO:0046872 ... Q15075 11741531
    24094 1joc:B (2.2) BS02 ZN ? GO:0046872 ... Q15075 11741531
    24095 1joc:B (2.2) BS03 ITP ? GO:0046872 ... Q15075 11741531 MOAD: Kd=24uM
    PDBbind: -logKd/Ki=4.62, Kd=24uM
    24096 1jod:A (3.2) BS01 ZN ? GO:0005634 ... Q64288 12054872
    24097 1jod:B (3.2) BS01 ZN ? GO:0005634 ... Q64288 12054872
    24098 1jod:B (3.2) BS02 ZN ? GO:0005634 ... Q64288 12054872
    24099 1joe:A (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    24100 1joe:B (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    24101 1joe:C (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    24102 1joe:D (2.4) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 N/A
    24103 1jof:B (2.5) BS01 PIN 5.5.1.5 GO:0016853 ... P38677 11937053
    24104 1jof:H (2.5) BS01 PIN 5.5.1.5 GO:0016853 ... P38677 11937053
    24105 1joi:A (2.05) BS01 CU ? GO:0005507 ... P80546 8109977
    24106 1joj:A (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    24107 1joj:A (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    24108 1joj:A (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    24109 1joj:B (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    24110 1joj:B (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    24111 1joj:B (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    24112 1joj:C (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    24113 1joj:C (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    24114 1joj:C (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    24115 1joj:D (3.0) BS01 peptide ? GO:0005537 ... P55915 11580281
    24116 1joj:D (3.0) BS02 MN ? GO:0005537 ... P55915 11580281
    24117 1joj:D (3.0) BS03 CA ? GO:0005537 ... P55915 11580281
    24118 1jok:A (-1.00) BS01 THP 3.1.31.1 GO:0003676 ... P00644 9369015
    24119 1jol:A (1.96) BS01 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    24120 1jol:B (1.96) BS01 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    24121 1jom:A (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    24122 1jom:A (1.9) BS02 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    24123 1joq:A (-1.00) BS01 THP 3.1.31.1 GO:0003676 ... P00644 9369015
    24124 1jot:A (2.2) BS01 peptide ? GO:0030246 ... P18674 9497359
    24125 1jou:B (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    24126 1jou:D (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    24127 1jou:F (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    24128 1jp3:A (1.8) BS01 EGC 2.5.1.31 GO:0000287 ... P60472 11581264
    24129 1jp4:A (1.69) BS01 PO4 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    24130 1jp4:A (1.69) BS02 MG 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    24131 1jp4:A (1.69) BS03 MG 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    24132 1jp4:A (1.69) BS04 AMP 3.1.3.57
    3.1.3.7
    GO:0000287 ... Q9Z1N4 11812139
    24133 1jp5:A (2.7) BS01 peptide N/A N/A N/A 11591344
    24134 1jp5:B (2.7) BS01 peptide N/A N/A N/A 11591344
    24135 1jp6:A (2.3) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    24136 1jp7:A (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    24137 1jp7:B (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    24138 1jp7:C (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    24139 1jp8:A (2.3) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    24140 1jp9:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    24141 1jpa:A (1.91) BS01 ANP 2.7.10.1 GO:0004672 ... P54763 11572780
    24142 1jpa:B (1.91) BS01 ANP 2.7.10.1 GO:0004672 ... P54763 11572780
    24143 1jpb:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11796110
    24144 1jpc:A (2.0) BS01 MAN ? N/A P30617 8939757
    24145 1jpc:A (2.0) BS02 MAN ? N/A P30617 8939757
    24146 1jpc:A (2.0) BS03 MAN ? N/A P30617 8939757
    24147 1jpc:A (2.0) BS04 MAN ? N/A P30617 8939757
    24148 1jpc:A (2.0) BS05 MAN ? N/A P30617 8939757
    24149 1jpf:A (2.18) BS01 peptide ? N/A P01899 11580250
    24150 1jpg:A (2.2) BS01 peptide ? N/A P01899 11580250
    24151 1jpj:A (2.3) BS01 GNP 3.6.5.4 GO:0003924 ... O07347 11566135
    24152 1jpl:A (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    24153 1jpl:B (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    24154 1jpl:C (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    24155 1jpl:D (2.4) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    24156 1jpm:A (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    24157 1jpm:B (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    24158 1jpm:C (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    24159 1jpm:D (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    24160 1jpn:A (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... O07347 11566135
    24161 1jpn:B (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... O07347 11566135
    24162 1jpp:A (3.1) BS01 peptide ? GO:0007155 ... Q02248 11707392
    24163 1jpp:B (3.1) BS01 peptide ? GO:0007155 ... Q02248 11707392
    24164 1jpr:A (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    24165 1jpr:A (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    24166 1jpr:B (1.88) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    24167 1jpr:B (1.88) BS02 MN 1.17.4.1 GO:0004748 ... P69924 11315567
    24168 1jpu:A (1.8) BS01 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    24169 1jpu:A (1.8) BS02 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    24170 1jpv:A (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    24171 1jpv:B (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    24172 1jpv:C (1.8) BS01 SO4 2.4.2.1
    2.4.2.28
    GO:0003824 ... P50389 11489901
    24173 1jpw:A (2.5) BS01 peptide ? GO:0007155 ... P35222 11713476
    24174 1jpw:B (2.5) BS01 peptide ? GO:0007155 ... P35222 11713476
    24175 1jpw:C (2.5) BS01 peptide ? GO:0007155 ... P35222 11713476
    24176 1jpz:A (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695892
    24177 1jpz:A (1.65) BS02 140 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695892 MOAD: Kd=262nM
    BindingDB: Kd=82nM
    24178 1jpz:B (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695892
    24179 1jpz:B (1.65) BS02 140 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 11695892 MOAD: Kd=262nM
    BindingDB: Kd=82nM
    24180 1jq3:A (1.8) BS01 AAT 2.5.1.16 GO:0003824 ... Q9WZC2 11731804 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    24181 1jq3:C (1.8) BS01 AAT 2.5.1.16 GO:0003824 ... Q9WZC2 11731804 MOAD: ic50=0.2uM
    24182 1jq3:D (1.8) BS01 AAT 2.5.1.16 GO:0003824 ... Q9WZC2 11731804 MOAD: ic50=0.2uM
    24183 1jq4:A (-1.00) BS01 FES 1.14.13.25 GO:0051536 ... P22868 11772001
    24184 1jq5:A (1.7) BS01 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    24185 1jq5:A (1.7) BS02 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    24186 1jq5:A (1.7) BS03 NAD 1.1.1.6 GO:0005829 ... P32816 11566129
    24187 1jq7:A (3.0) BS01 0FP 3.4.21.97 GO:0004252 ... P16753 11524687
    24188 1jq7:B (3.0) BS01 0FP 3.4.21.97 GO:0004252 ... P16753 11524687
    24189 1jq8:A (2.0) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 12351825
    24190 1jq8:B (2.0) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 12351825
    24191 1jq9:A (1.8) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 12186870
    24192 1jq9:B (1.8) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 12186870
    24193 1jqa:A (2.05) BS01 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    24194 1jqa:A (2.05) BS02 ZN 1.1.1.6 GO:0005829 ... P32816 11566129
    24195 1jqa:A (2.05) BS03 GOL 1.1.1.6 GO:0005829 ... P32816 11566129
    24196 1jqb:A (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    24197 1jqb:B (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    24198 1jqb:C (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    24199 1jqb:D (1.97) BS01 ZN 1.1.1.80 GO:0008270 ... P25984 12381840
    24200 1jqc:A (1.61) BS01 MN 1.17.4.1 GO:0004748 ... P69924 11315567

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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