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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23001 1jb0:A (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23002 1jb0:A (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23003 1jb0:A (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23004 1jb0:A (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23005 1jb0:A (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23006 1jb0:A (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23007 1jb0:A (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23008 1jb0:A (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23009 1jb0:A (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23010 1jb0:A (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23011 1jb0:A (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23012 1jb0:A (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23013 1jb0:A (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23014 1jb0:A (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23015 1jb0:A (2.5) BS47 PQN 1.97.1.12 GO:0000287 ... P0A405 11418848
    23016 1jb0:A (2.5) BS48 SF4 1.97.1.12 GO:0000287 ... P0A405 11418848
    23017 1jb0:A (2.5) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23018 1jb0:A (2.5) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23019 1jb0:A (2.5) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23020 1jb0:A (2.5) BS52 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23021 1jb0:B (2.5) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 11418848
    23022 1jb0:B (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23023 1jb0:B (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23024 1jb0:B (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23025 1jb0:B (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23026 1jb0:B (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23027 1jb0:B (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23028 1jb0:B (2.5) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 11418848
    23029 1jb0:B (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23030 1jb0:B (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23031 1jb0:B (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23032 1jb0:B (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23033 1jb0:B (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23034 1jb0:B (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23035 1jb0:B (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23036 1jb0:B (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23037 1jb0:B (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23038 1jb0:B (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23039 1jb0:B (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23040 1jb0:B (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23041 1jb0:B (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23042 1jb0:B (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23043 1jb0:B (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23044 1jb0:B (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23045 1jb0:B (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23046 1jb0:B (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23047 1jb0:B (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23048 1jb0:B (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23049 1jb0:B (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23050 1jb0:B (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23051 1jb0:B (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23052 1jb0:B (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23053 1jb0:B (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23054 1jb0:B (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23055 1jb0:B (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23056 1jb0:B (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23057 1jb0:B (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23058 1jb0:B (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23059 1jb0:B (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23060 1jb0:B (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23061 1jb0:B (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23062 1jb0:B (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23063 1jb0:B (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23064 1jb0:B (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23065 1jb0:B (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23066 1jb0:B (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23067 1jb0:B (2.5) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23068 1jb0:B (2.5) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    23069 1jb0:B (2.5) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 11418848
    23070 1jb0:C (2.5) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    23071 1jb0:C (2.5) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    23072 1jb0:F (2.5) BS01 CLA ? GO:0009522 ... P0A401 11418848
    23073 1jb0:F (2.5) BS02 CLA ? GO:0009522 ... P0A401 11418848
    23074 1jb0:F (2.5) BS03 CLA ? GO:0009522 ... P0A401 11418848
    23075 1jb0:F (2.5) BS04 CLA ? GO:0009522 ... P0A401 11418848
    23076 1jb0:I (2.5) BS01 CLA ? GO:0009522 ... P0A427 11418848
    23077 1jb0:I (2.5) BS02 CLA ? GO:0009522 ... P0A427 11418848
    23078 1jb0:I (2.5) BS03 CLA ? GO:0009522 ... P0A427 11418848
    23079 1jb0:I (2.5) BS04 CLA ? GO:0009522 ... P0A427 11418848
    23080 1jb0:J (2.5) BS01 CLA ? GO:0009522 ... P0A429 11418848
    23081 1jb0:J (2.5) BS02 CLA ? GO:0009522 ... P0A429 11418848
    23082 1jb0:J (2.5) BS03 CLA ? GO:0009522 ... P0A429 11418848
    23083 1jb0:J (2.5) BS04 CLA ? GO:0009522 ... P0A429 11418848
    23084 1jb0:J (2.5) BS05 CLA ? GO:0009522 ... P0A429 11418848
    23085 1jb0:J (2.5) BS06 CLA ? GO:0009522 ... P0A429 11418848
    23086 1jb0:K (2.5) BS01 CLA ? GO:0009522 ... P0A425 11418848
    23087 1jb0:L (2.5) BS01 CLA ? GO:0009522 ... Q8DGB4 11418848
    23088 1jb0:L (2.5) BS02 CLA ? GO:0009522 ... Q8DGB4 11418848
    23089 1jb0:L (2.5) BS03 CLA ? GO:0009522 ... Q8DGB4 11418848
    23090 1jb0:L (2.5) BS04 CA ? GO:0009522 ... Q8DGB4 11418848
    23091 1jb0:L (2.5) BS05 CLA ? GO:0009522 ... Q8DGB4 11418848
    23092 1jb0:L (2.5) BS06 CLA ? GO:0009522 ... Q8DGB4 11418848
    23093 1jb0:L (2.5) BS07 CLA ? GO:0009522 ... Q8DGB4 11418848
    23094 1jb0:M (2.5) BS01 CLA ? GO:0009522 ... P0A403 11418848
    23095 1jb0:M (2.5) BS02 CLA ? GO:0009522 ... P0A403 11418848
    23096 1jb7:A (1.86) BS01 dna ? GO:0000723 ... P29549 11428895
    23097 1jb7:A (1.86) BS02 dna ? GO:0000723 ... P29549 11428895
    23098 1jb7:B (1.86) BS01 dna ? GO:0000781 ... P16458 11428895
    23099 1jb9:A (1.7) BS01 FAD 1.18.1.2 GO:0000166 ... Q41736 11724563
    23100 1jba:A (-1.00) BS01 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    23101 1jba:A (-1.00) BS02 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    23102 1jba:A (-1.00) BS03 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    23103 1jbc:A (1.15) BS01 MN ? GO:0030246 ... P02866 15299577
    23104 1jbc:A (1.15) BS02 CA ? GO:0030246 ... P02866 15299577
    23105 1jbd:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11814338
    23106 1jbp:E (2.2) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 8003955
    23107 1jbp:E (2.2) BS02 ADP 2.7.11.11 GO:0000122 ... P05132 8003955
    23108 1jbq:A (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    23109 1jbq:A (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    23110 1jbq:B (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    23111 1jbq:B (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    23112 1jbq:C (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    23113 1jbq:C (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    23114 1jbq:D (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    23115 1jbq:D (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    23116 1jbq:E (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    23117 1jbq:E (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    23118 1jbq:F (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    23119 1jbq:F (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    23120 1jbr:A (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    23121 1jbr:B (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    23122 1jbs:A (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    23123 1jbs:B (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    23124 1jbt:A (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    23125 1jbt:B (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    23126 1jbu:H (2.0) BS01 peptide 3.4.21.21 GO:0004252 ... P08709 11470437
    23127 1jbv:A (1.95) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    23128 1jbv:A (1.95) BS02 ACP 6.3.2.17 GO:0004326 ... P15925 11501996
    23129 1jbw:A (1.85) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    23130 1jbw:A (1.85) BS02 ACQ 6.3.2.17 GO:0004326 ... P15925 11501996
    23131 1jbw:A (1.85) BS03 TMF 6.3.2.17 GO:0004326 ... P15925 11501996
    23132 1jbz:A (1.5) BS01 MG ? GO:0003674 ... P42212 12501176
    23133 1jc2:A (-1.00) BS01 CA ? GO:0005509 ... P02588 11513585
    23134 1jc2:A (-1.00) BS02 CA ? GO:0005509 ... P02588 11513585
    23135 1jc9:A (2.01) BS01 CA ? GO:0005576 ... Q9U8W8 11707569
    23136 1jca:B (2.5) BS01 peptide ? GO:0005179 ... P01308 11779231
    23137 1jca:B (2.5) BS02 peptide ? GO:0005179 ... P01308 11779231
    23138 1jcc:A (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    23139 1jcc:B (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    23140 1jcc:C (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    23141 1jcg:A (3.1) BS01 ANP ? GO:0000902 ... Q9WZ57 11544518
    23142 1jci:A (1.9) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11851415
    23143 1jcj:A (1.1) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    23144 1jcj:B (1.1) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    23145 1jcl:A (1.05) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    23146 1jcl:B (1.05) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    23147 1jcm:P (2.1) BS01 PO4 4.1.1.48
    5.3.1.24
    GO:0004425 ... P00909 11856350
    23148 1jcm:P (2.1) BS02 137 4.1.1.48
    5.3.1.24
    GO:0004425 ... P00909 11856350
    23149 1jcn:A (2.5) BS01 CPR 1.1.1.205 GO:0000166 ... P20839 N/A
    23150 1jcn:B (2.5) BS01 CPR 1.1.1.205 GO:0000166 ... P20839 N/A
    23151 1jco:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 11524020
    23152 1jcq:A (2.3) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658
    23153 1jcq:A (2.3) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658 BindingDB: Kd=2.0nM
    23154 1jcq:A (2.3) BS03 739 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658
    23155 1jcq:B (2.3) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 11687658
    23156 1jcq:B (2.3) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 11687658
    23157 1jcq:B (2.3) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 11687658
    23158 1jcq:B (2.3) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 11687658
    23159 1jcq:B (2.3) BS05 739 2.5.1.58 GO:0003824 ... P49356 11687658
    23160 1jcr:A (2.0) BS01 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    23161 1jcr:B (2.0) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 11687658
    23162 1jcr:B (2.0) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    23163 1jcr:B (2.0) BS03 FPP 2.5.1.58 GO:0003824 ... Q02293 11687658
    23164 1jcs:A (2.2) BS01 peptide 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    23165 1jcs:A (2.2) BS02 FII 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    23166 1jcs:B (2.2) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 11687658
    23167 1jcs:B (2.2) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    23168 1jcs:B (2.2) BS03 FII 2.5.1.58 GO:0003824 ... Q02293 11687658
    23169 1jct:A (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    23170 1jct:A (2.75) BS02 GKR 4.2.1.40 GO:0000287 ... P0AES2 11513584
    23171 1jct:B (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    23172 1jct:B (2.75) BS02 GKR 4.2.1.40 GO:0000287 ... P0AES2 11513584
    23173 1jcv:A (1.55) BS01 CU 1.15.1.1 GO:0004784 ... P00445 8652572
    23174 1jcv:A (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 8652572
    23175 1jcx:A (1.8) BS01 PAI 2.5.1.55 GO:0005737 ... O66496 11747443 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    23176 1jcx:B (1.8) BS01 PAI 2.5.1.55 GO:0005737 ... O66496 11747443 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    23177 1jcy:A (1.9) BS01 R5P 2.5.1.55 GO:0005737 ... O66496 11747443
    23178 1jcy:A (1.9) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 11747443
    23179 1jcy:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11747443
    23180 1jcz:A (1.55) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    23181 1jcz:B (1.55) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    23182 1jd0:A (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    23183 1jd0:A (1.5) BS02 AZM 4.2.1.1 GO:0004089 ... O43570 11493685 PDBbind: -logKd/Ki=8.24, Ki=5.7nM
    BindingDB: Ki=5.7nM, Kd=130nM, IC50=60nM
    23184 1jd0:B (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    23185 1jd0:B (1.5) BS02 AZM 4.2.1.1 GO:0004089 ... O43570 11493685 BindingDB: Ki=5.7nM, Kd=130nM, IC50=60nM
    23186 1jd2:G (3.0) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11493007
    23187 1jd2:H (3.0) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 11493007
    23188 1jd2:H (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043 11493007
    23189 1jd2:I (3.0) BS01 peptide 3.4.99.46 GO:0000502 ... P25451 11493007
    23190 1jd2:I (3.0) BS02 MG 3.4.99.46 GO:0000502 ... P25451 11493007
    23191 1jd2:K (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11493007
    23192 1jd2:L (3.0) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11493007
    23193 1jd2:N (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11493007
    23194 1jd2:O (3.0) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 11493007
    23195 1jd2:P (3.0) BS01 peptide 3.4.99.46 GO:0000502 ... P25451 11493007
    23196 1jd4:A (2.7) BS01 ZN 2.3.2.27 N/A Q24306 11511363
    23197 1jd4:B (2.7) BS01 ZN 2.3.2.27 N/A Q24306 11511363
    23198 1jd5:A (1.9) BS01 peptide 2.3.2.27 N/A Q24306 11511363
    23199 1jd5:A (1.9) BS02 ZN 2.3.2.27 N/A Q24306 11511363
    23200 1jd6:A (2.7) BS01 peptide 2.3.2.27 N/A Q24306 11511363

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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