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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21401 1ir2:A (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21402 1ir2:A (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21403 1ir2:B (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21404 1ir2:B (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21405 1ir2:B (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21406 1ir2:C (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21407 1ir2:C (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21408 1ir2:C (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21409 1ir2:D (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21410 1ir2:D (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21411 1ir2:D (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21412 1ir2:E (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21413 1ir2:E (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21414 1ir2:E (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21415 1ir2:F (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21416 1ir2:F (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21417 1ir2:F (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21418 1ir2:G (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21419 1ir2:G (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21420 1ir2:G (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21421 1ir2:H (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21422 1ir2:H (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21423 1ir2:H (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21424 1ir2:S (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21425 1ir2:S (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21426 1ir2:S (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21427 1ir2:T (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21428 1ir2:T (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21429 1ir2:T (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21430 1ir2:U (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21431 1ir2:U (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21432 1ir2:U (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21433 1ir2:V (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21434 1ir2:V (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21435 1ir2:V (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21436 1ir2:W (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21437 1ir2:W (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21438 1ir2:W (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21439 1ir2:X (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21440 1ir2:X (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21441 1ir2:X (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21442 1ir2:Y (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21443 1ir2:Y (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21444 1ir2:Y (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21445 1ir2:Z (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21446 1ir2:Z (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21447 1ir2:Z (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21448 1ir3:A (1.9) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 9312016
    21449 1ir3:A (1.9) BS02 MG 2.7.10.1 GO:0004672 ... P06213 9312016
    21450 1ir3:A (1.9) BS03 ANP 2.7.10.1 GO:0004672 ... P06213 9312016
    21451 1ir6:A (2.9) BS01 MN 3.1.-.- GO:0003676 ... Q5SJ47 11972066
    21452 1irb:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 8810924
    21453 1irc:A (2.17) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8204590
    21454 1irc:A (2.17) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8204590
    21455 1ird:A (1.25) BS01 HEM ? GO:0004601 ... P69905 N/A
    21456 1ird:B (1.25) BS01 HEM ? GO:0004601 ... P68871 N/A
    21457 1ire:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 11700034
    21458 1iri:A (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21459 1iri:B (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21460 1iri:C (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21461 1iri:D (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    21462 1irj:A (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21463 1irj:A (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21464 1irj:B (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21465 1irj:B (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21466 1irj:B (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    21467 1irj:C (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21468 1irj:C (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21469 1irj:D (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21470 1irj:D (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21471 1irj:D (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    21472 1irj:E (2.1) BS01 CPS ? GO:0002523 ... P06702 11851337
    21473 1irj:E (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21474 1irj:E (2.1) BS03 CA ? GO:0002523 ... P06702 11851337
    21475 1irj:F (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21476 1irj:F (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21477 1irj:G (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21478 1irj:G (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21479 1irj:G (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    21480 1irj:H (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    21481 1irj:H (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    21482 1irn:A (1.2) BS01 ZN ? GO:0005506 ... P00268 8799113
    21483 1iro:A (1.1) BS01 FE ? GO:0005506 ... P00268 8799113
    21484 1irs:A (-1.00) BS01 peptide ? GO:0005158 ... P35568 8599766
    21485 1iru:1 (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    21486 1iru:1 (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    21487 1iru:A (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    21488 1iru:B (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    21489 1iru:C (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    21490 1iru:D (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    21491 1iru:G (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    21492 1iru:G (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    21493 1iru:I (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    21494 1iru:J (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    21495 1iru:J (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    21496 1iru:K (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    21497 1iru:L (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    21498 1iru:M (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    21499 1iru:M (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    21500 1iru:O (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    21501 1iru:P (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    21502 1iru:Q (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    21503 1iru:R (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    21504 1iru:U (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    21505 1iru:U (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    21506 1iru:W (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    21507 1iru:X (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    21508 1iru:X (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    21509 1iru:Y (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    21510 1iru:Z (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    21511 1irv:A (1.9) BS01 HEM ? GO:0005515 ... P00044 8718869
    21512 1irw:A (2.0) BS01 HEM ? GO:0005515 ... P00044 8718869
    21513 1irx:A (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    21514 1irx:A (2.6) BS02 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    21515 1irx:B (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    21516 1is0:A (1.9) BS01 peptide 2.7.10.2 N/A P00524 11782172
    21517 1is0:B (1.9) BS01 peptide 2.7.10.2 N/A P00524 11782172
    21518 1is2:A (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21519 1is2:A (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21520 1is2:B (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21521 1is2:B (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    21522 1is3:A (1.45) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    21523 1is3:A (1.45) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    21524 1is4:A (1.9) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    21525 1is4:A (1.9) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    21526 1is7:K (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21527 1is7:K (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21528 1is7:L (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21529 1is7:L (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21530 1is7:M (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21531 1is7:M (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21532 1is7:N (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21533 1is7:N (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21534 1is7:O (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21535 1is7:O (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21536 1is7:P (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21537 1is7:P (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21538 1is7:Q (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21539 1is7:Q (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21540 1is7:R (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21541 1is7:R (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21542 1is7:S (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21543 1is7:S (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21544 1is7:T (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    21545 1is7:T (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    21546 1is8:A (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21547 1is8:B (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21548 1is8:C (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21549 1is8:D (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21550 1is8:E (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21551 1is8:F (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21552 1is8:G (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21553 1is8:H (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21554 1is8:I (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21555 1is8:J (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    21556 1is8:K (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21557 1is8:K (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21558 1is8:L (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21559 1is8:L (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21560 1is8:M (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21561 1is8:M (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21562 1is8:N (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21563 1is8:N (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21564 1is8:O (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21565 1is8:O (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21566 1is8:P (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21567 1is8:P (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21568 1is8:Q (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21569 1is8:Q (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21570 1is8:R (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21571 1is8:R (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21572 1is8:S (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21573 1is8:S (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21574 1is8:T (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    21575 1is8:T (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    21576 1isa:A (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21577 1isa:B (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21578 1isb:A (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21579 1isb:B (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21580 1isc:A (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21581 1isc:A (1.8) BS02 AZI 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21582 1isc:B (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21583 1isc:B (1.8) BS02 AZI 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    21584 1isg:A (2.6) BS01 AGS 3.2.2.6 GO:0001931 ... Q10588 11866528
    21585 1isg:B (2.6) BS01 AGS 3.2.2.6 GO:0001931 ... Q10588 11866528
    21586 1ish:A (2.4) BS01 ENP 3.2.2.6 GO:0001931 ... Q10588 11866528
    21587 1ish:B (2.4) BS01 ENP 3.2.2.6 GO:0001931 ... Q10588 11866528
    21588 1isi:A (2.1) BS01 NCA 3.2.2.6 GO:0001931 ... Q10588 11866528
    21589 1isi:A (2.1) BS02 ENQ 3.2.2.6 GO:0001931 ... Q10588 11866528
    21590 1isi:B (2.1) BS01 NCA 3.2.2.6 GO:0001931 ... Q10588 11866528
    21591 1isi:B (2.1) BS02 ENQ 3.2.2.6 GO:0001931 ... Q10588 11866528
    21592 1isj:A (2.3) BS01 NMN 3.2.2.6 GO:0001931 ... Q10588 11866528
    21593 1isj:B (2.3) BS01 NMN 3.2.2.6 GO:0001931 ... Q10588 11866528
    21594 1ism:A (3.0) BS01 NCA 3.2.2.6 GO:0001931 ... Q10588 11866528
    21595 1ism:B (3.0) BS01 NCA 3.2.2.6 GO:0001931 ... Q10588 11866528
    21596 1iso:A (1.9) BS01 NAD 1.1.1.42 GO:0000287 ... P08200 8639526
    21597 1isp:A (1.3) BS01 GOL 3.1.1.3 GO:0004806 ... P37957 12077437
    21598 1isq:A (2.3) BS01 peptide ? GO:0003677 ... O73947 12296822
    21599 1isr:A (4.0) BS01 GLU ? GO:0004930 ... P23385 11867751
    21600 1iss:A (3.3) BS01 MCG ? GO:0004930 ... P23385 11867751 BindingDB: Ki=>10000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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