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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 1aqf:D (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1802 1aqf:D (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1803 1aqf:E (2.7) BS01 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1804 1aqf:F (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1805 1aqf:F (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1806 1aqf:G (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1807 1aqf:G (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1808 1aqf:H (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1809 1aqf:H (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1810 1aqh:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    1811 1aqh:A (2.0) BS02 CL 3.2.1.1 GO:0003824 ... P29957 9541387
    1812 1aqi:A (2.6) BS01 SAH 2.1.1.72 GO:0003676 ... P14385 8995524 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    1813 1aqi:B (2.6) BS01 SAH 2.1.1.72 GO:0003676 ... P14385 8995524
    1814 1aqj:A (2.6) BS01 SFG 2.1.1.72 GO:0003676 ... P14385 8995524 PDBbind: -logKd/Ki=6.47, Kd=0.34uM
    1815 1aqj:B (2.6) BS01 SFG 2.1.1.72 GO:0003676 ... P14385 8995524
    1816 1aql:A (2.8) BS01 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1817 1aql:A (2.8) BS02 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1818 1aql:B (2.8) BS01 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1819 1aql:B (2.8) BS02 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1820 1aqm:A (1.85) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    1821 1aqm:A (1.85) BS02 CL 3.2.1.1 GO:0003824 ... P29957 9541387
    1822 1aqn:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    1823 1aqn:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    1824 1aqp:A (2.0) BS01 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    1825 1aqp:A (2.0) BS02 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    1826 1aqq:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    1827 1aqq:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    1828 1aqq:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    1829 1aqq:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    1830 1aqq:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    1831 1aqq:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    1832 1aqq:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    1833 1aqr:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    1834 1aqr:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    1835 1aqr:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    1836 1aqr:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    1837 1aqr:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    1838 1aqs:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    1839 1aqs:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    1840 1aqs:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    1841 1aqs:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    1842 1aqs:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    1843 1aqs:A (-1.00) BS06 CU1 N/A GO:0005507 ... N/A 8566237
    1844 1aqs:A (-1.00) BS07 CU1 N/A GO:0005507 ... N/A 8566237
    1845 1aqu:A (1.6) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1846 1aqu:A (1.6) BS02 EST 2.8.2.4 GO:0004304 ... P49891 9360604
    1847 1aqu:B (1.6) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1848 1aqu:B (1.6) BS02 EST 2.8.2.4 GO:0004304 ... P49891 9360604
    1849 1aqv:A (1.94) BS01 0HG 2.5.1.18 GO:0000302 ... P09211 9351803
    1850 1aqv:B (1.94) BS01 0HG 2.5.1.18 GO:0000302 ... P09211 9351803
    1851 1aqw:A (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1852 1aqw:B (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1853 1aqw:C (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1854 1aqw:D (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1855 1aqx:A (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1856 1aqx:B (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1857 1aqx:C (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1858 1aqx:D (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1859 1aqy:A (1.75) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1860 1aqy:B (1.75) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1861 1ar1:A (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P98002 9380672
    1862 1ar1:A (2.7) BS02 MG 7.1.1.9 GO:0004129 ... P98002 9380672
    1863 1ar1:A (2.7) BS03 CA 7.1.1.9 GO:0004129 ... P98002 9380672
    1864 1ar1:A (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    1865 1ar1:A (2.7) BS05 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    1866 1ar1:B (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    1867 1ar1:B (2.7) BS02 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    1868 1ar4:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    1869 1ar4:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    1870 1ar5:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1871 1ar5:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1872 1ar6:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1873 1ar7:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1874 1ar8:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1875 1ar9:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1876 1arc:A (2.0) BS01 TCK 3.4.21.50 GO:0004252 ... P15636 2492988
    1877 1arg:A (2.2) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1878 1arg:A (2.2) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1879 1arg:B (2.2) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1880 1arg:B (2.2) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1881 1arh:A (2.3) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1882 1arh:A (2.3) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1883 1arh:B (2.3) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1884 1arh:B (2.3) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1885 1ari:A (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7851426
    1886 1ari:B (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7851426
    1887 1arm:A (1.76) BS01 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    1888 1arm:A (1.76) BS02 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    1889 1arp:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    1890 1arp:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    1891 1arp:A (1.9) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 8289254
    1892 1ars:A (1.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7798192
    1893 1art:A (1.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7798192
    1894 1art:A (1.8) BS02 0A0 2.6.1.1 GO:0003824 ... P00509 7798192
    1895 1aru:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1896 1aru:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1897 1aru:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1898 1arv:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1899 1arv:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1900 1arv:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1901 1arw:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1902 1arw:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1903 1arw:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1904 1arx:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1905 1arx:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1906 1arx:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1907 1arx:A (1.9) BS04 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1908 1arx:A (1.9) BS05 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1909 1ary:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1910 1ary:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1911 1ary:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1912 1ary:A (1.9) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1913 1arz:A (2.6) BS01 PO4 1.17.1.8 GO:0005737 ... P04036 9398235
    1914 1arz:B (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1915 1arz:B (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1916 1arz:C (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1917 1arz:C (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1918 1arz:D (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1919 1arz:D (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1920 1as0:A (2.0) BS01 MG ? GO:0000287 ... P10824 9398294
    1921 1as0:A (2.0) BS02 GSP ? GO:0000287 ... P10824 9398294
    1922 1as2:A (2.8) BS01 GDP ? GO:0000287 ... P10824 9398294
    1923 1as3:A (2.4) BS01 GDP ? GO:0000287 ... P10824 9398294
    1924 1as4:B (2.1) BS01 ACT ? N/A P01011 9521649
    1925 1as6:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1926 1as6:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1927 1as6:A (1.8) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1928 1as6:B (1.8) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1929 1as6:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1930 1as6:B (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1931 1as6:B (1.8) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1932 1as6:C (1.8) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1933 1as6:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1934 1as6:C (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1935 1as6:C (1.8) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1936 1as7:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1937 1as7:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1938 1as7:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1939 1as7:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1940 1as7:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1941 1as7:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1942 1as8:A (1.85) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1943 1as8:A (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1944 1as8:A (1.85) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1945 1as8:A (1.85) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1946 1as8:B (1.85) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1947 1as8:B (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1948 1as8:B (1.85) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1949 1as8:C (1.85) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1950 1as8:C (1.85) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1951 1as8:C (1.85) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1952 1as8:C (1.85) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1953 1asa:A (2.4) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1954 1asb:A (2.6) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1955 1asc:A (2.4) BS01 NPL 2.6.1.1 GO:0003824 ... P00509 N/A
    1956 1asd:A (2.2) BS01 MPL 2.6.1.1 GO:0003824 ... P00509 N/A
    1957 1ase:A (2.5) BS01 NOP 2.6.1.1 GO:0003824 ... P00509 N/A
    1958 1asf:A (2.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1959 1asg:A (2.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 N/A
    1960 1ash:A (2.15) BS01 HEM ? GO:0005506 ... P28316 7753786
    1961 1asj:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1962 1asl:A (2.6) BS01 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1963 1asl:A (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1964 1asl:B (2.6) BS01 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1965 1asl:B (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1966 1asm:A (2.35) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1967 1asm:B (2.35) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1968 1asn:A (2.5) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1969 1asn:B (2.5) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1970 1aso:A (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1971 1aso:A (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1972 1aso:A (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1973 1aso:A (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1974 1aso:B (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1975 1aso:B (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1976 1aso:B (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1977 1aso:B (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1978 1asp:A (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1979 1asp:A (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1980 1asp:A (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1981 1asp:A (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1982 1asp:B (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1983 1asp:B (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1984 1asp:B (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1985 1asp:B (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1986 1asq:A (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1987 1asq:A (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1988 1asq:A (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1989 1asq:A (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1990 1asq:A (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1991 1asq:A (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1992 1asq:B (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1993 1asq:B (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1994 1asq:B (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1995 1asq:B (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1996 1asq:B (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1997 1asq:B (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1998 1ast:A (1.8) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 1319561
    1999 1asy:A (2.9) BS01 rna 6.1.1.12 GO:0000166 ... P04802 2047877
    2000 1asy:B (2.9) BS01 rna 6.1.1.12 GO:0000166 ... P04802 2047877

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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