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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8yfq:A (3.3) BS01 dna N/A N/A C4R4Y0 39245712
    2 8yfq:A (3.3) BS02 dna N/A N/A C4R4Y0 39245712
    3 8yfq:A (3.3) BS03 rna N/A N/A C4R4Y0 39245712
    4 8yfq:A (3.3) BS04 ZN N/A N/A C4R4Y0 39245712
    5 8yfq:A (3.3) BS05 ZN N/A N/A C4R4Y0 39245712
    6 8yfq:A (3.3) BS06 MG N/A N/A C4R4Y0 39245712
    7 8yfq:B (3.3) BS01 dna N/A N/A C4QZQ7 39245712
    8 8yfq:B (3.3) BS02 rna N/A N/A C4QZQ7 39245712
    9 8yfq:B (3.3) BS03 ZN N/A N/A C4QZQ7 39245712
    10 8yfq:C (3.3) BS01 ZN N/A N/A C4R7L2 39245712
    11 8yfq:E (3.3) BS01 dna N/A N/A C4R3P8 39245712
    12 8yfq:E (3.3) BS02 dna N/A N/A C4R3P8 39245712
    13 8yfq:I (3.3) BS01 ZN N/A N/A F2QPE6 39245712
    14 8yfq:I (3.3) BS02 ZN N/A N/A F2QPE6 39245712
    15 8yfq:J (3.3) BS01 ZN N/A N/A C4R009 39245712
    16 8yfq:L (3.3) BS01 ZN N/A N/A F2QMI1 39245712
    17 8yfq:R (3.3) BS01 rna N/A N/A F2QV79 39245712
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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