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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7n30:LB (2.66) BS01 rna ? GO:0000027 ... P60422 34234344
    2 7n30:LB (2.66) BS02 rna ? GO:0000027 ... P60422 34234344
    3 7n30:LC (2.66) BS01 rna ? GO:0000027 ... P60438 34234344
    4 7n30:LD (2.66) BS01 rna ? GO:0001070 ... P60723 34234344
    5 7n30:LD (2.66) BS02 MG ? GO:0001070 ... P60723 34234344
    6 7n30:LE (2.66) BS01 rna ? GO:0000027 ... P62399 34234344
    7 7n30:LE (2.66) BS02 rna ? GO:0000027 ... P62399 34234344
    8 7n30:LF (2.66) BS01 rna ? GO:0000027 ... P0AG55 34234344
    9 7n30:LI (2.66) BS01 rna ? GO:0002181 ... P0A7R1 34234344
    10 7n30:LM (2.66) BS01 rna ? GO:0002181 ... P0AA10 34234344
    11 7n30:LN (2.66) BS01 rna ? GO:0002181 ... P0ADY3 34234344
    12 7n30:LN (2.66) BS02 rna ? GO:0002181 ... P0ADY3 34234344
    13 7n30:LO (2.66) BS01 rna ? GO:0002181 ... P02413 34234344
    14 7n30:LP (2.66) BS01 rna ? GO:0000027 ... P0ADY7 34234344
    15 7n30:LP (2.66) BS02 rna ? GO:0000027 ... P0ADY7 34234344
    16 7n30:LQ (2.66) BS01 rna ? GO:0000027 ... P0AG44 34234344
    17 7n30:LR (2.66) BS01 rna ? GO:0002181 ... P0C018 34234344
    18 7n30:LR (2.66) BS02 rna ? GO:0002181 ... P0C018 34234344
    19 7n30:LS (2.66) BS01 rna ? GO:0000027 ... P0A7K6 34234344
    20 7n30:LS (2.66) BS02 rna ? GO:0000027 ... P0A7K6 34234344
    21 7n30:LT (2.66) BS01 rna ? GO:0000027 ... P0A7L3 34234344
    22 7n30:LU (2.66) BS01 rna ? GO:0002181 ... P0AG48 34234344
    23 7n30:LV (2.66) BS01 rna ? GO:0002181 ... P61175 34234344
    24 7n30:LW (2.66) BS01 rna ? GO:0000027 ... P0ADZ0 34234344
    25 7n30:LX (2.66) BS01 rna ? GO:0000027 ... P60624 34234344
    26 7n30:LY (2.66) BS01 rna ? GO:0000027 ... P68919 34234344
    27 7n30:LY (2.66) BS02 rna ? GO:0000027 ... P68919 34234344
    28 7n30:La (2.66) BS01 rna ? GO:0000027 ... P0A7L8 34234344
    29 7n30:La (2.66) BS02 rna ? GO:0000027 ... P0A7L8 34234344
    30 7n30:Lb (2.66) BS01 rna ? GO:0000027 ... P0A7M2 34234344
    31 7n30:Lc (2.66) BS01 rna ? GO:0000027 ... P0A7M6 34234344
    32 7n30:Ld (2.66) BS01 rna ? GO:0000027 ... P0AG51 34234344
    33 7n30:Ld (2.66) BS02 rna ? GO:0000027 ... P0AG51 34234344
    34 7n30:Le (2.66) BS01 rna ? GO:0002181 ... P0A7M9 34234344
    35 7n30:Lf (2.66) BS01 rna ? GO:0000027 ... P0A7N4 34234344
    36 7n30:Lg (2.66) BS01 rna ? GO:0000027 ... P0A7N9 34234344
    37 7n30:Lh (2.66) BS01 rna ? GO:0002181 ... P0A7P5 34234344
    38 7n30:Li (2.66) BS01 rna ? GO:0002181 ... P0A7Q1 34234344
    39 7n30:Lj (2.66) BS01 rna ? GO:0002181 ... P0A7Q6 34234344
    40 7n30:SB (2.66) BS01 rna ? GO:0000028 ... P0A7V0 34234344
    41 7n30:SB (2.66) BS02 ZN ? GO:0000028 ... P0A7V0 34234344
    42 7n30:SC (2.66) BS01 rna ? GO:0000028 ... P0A7V3 34234344
    43 7n30:SD (2.66) BS01 rna ? GO:0000028 ... P0A7V8 34234344
    44 7n30:SD (2.66) BS02 MG ? GO:0000028 ... P0A7V8 34234344
    45 7n30:SE (2.66) BS01 rna ? GO:0000028 ... P0A7W1 34234344
    46 7n30:SF (2.66) BS01 rna ? GO:0002181 ... P02358 34234344
    47 7n30:SG (2.66) BS01 rna ? GO:0000028 ... P02359 34234344
    48 7n30:SH (2.66) BS01 rna ? GO:0000028 ... P0A7W7 34234344
    49 7n30:SI (2.66) BS01 rna ? GO:0000049 ... P0A7X3 34234344
    50 7n30:SI (2.66) BS02 rna ? GO:0000049 ... P0A7X3 34234344
    51 7n30:SJ (2.66) BS01 rna ? GO:0000049 ... P0A7R5 34234344
    52 7n30:SK (2.66) BS01 rna ? GO:0002181 ... P0A7R9 34234344
    53 7n30:SL (2.66) BS01 rna N/A GO:0003735 ... N/A 34234344
    54 7n30:SM (2.66) BS01 rna ? GO:0000049 ... P0A7S9 34234344
    55 7n30:SN (2.66) BS01 rna ? GO:0000028 ... P0AG59 34234344
    56 7n30:SO (2.66) BS01 rna ? GO:0000028 ... P0ADZ4 34234344
    57 7n30:SO (2.66) BS02 rna ? GO:0000028 ... P0ADZ4 34234344
    58 7n30:SP (2.66) BS01 rna ? GO:0000028 ... P0A7T3 34234344
    59 7n30:SQ (2.66) BS01 rna ? GO:0000028 ... P0AG63 34234344
    60 7n30:SR (2.66) BS01 rna ? GO:0002181 ... P0A7T7 34234344
    61 7n30:SS (2.66) BS01 rna ? GO:0000028 ... P0A7U3 34234344
    62 7n30:ST (2.66) BS01 rna ? GO:0000028 ... P0A7U7 34234344
    63 7n30:SU (2.66) BS01 rna ? GO:0000028 ... P68679 34234344
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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