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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7cp5:A (1.76) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    2 7cp5:A (1.76) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    3 7cp5:A (1.76) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    4 7cp5:A (1.76) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    5 7cp5:B (1.76) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 34274318
    6 7cp5:B (1.76) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 34274318
    7 7cp5:C (1.76) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    8 7cp5:D (1.76) BS01 DMU ? GO:0006123 ... P00423 34274318
    9 7cp5:F (1.76) BS01 ZN ? GO:0005740 ... P00428 34274318
    10 7cp5:J (1.76) BS01 DMU ? GO:0006123 ... P07470 34274318
    11 7cp5:J (1.76) BS02 DMU ? GO:0006123 ... P07470 34274318
    12 7cp5:L (1.76) BS01 DMU ? GO:0006123 ... P00430 34274318
    13 7cp5:M (1.76) BS01 DMU ? GO:0006123 ... P10175 34274318
    14 7cp5:N (1.76) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    15 7cp5:N (1.76) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 34274318
    16 7cp5:N (1.76) BS03 CU 7.1.1.9 GO:0004129 ... P00396 34274318
    17 7cp5:N (1.76) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34274318
    18 7cp5:O (1.76) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 34274318
    19 7cp5:O (1.76) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 34274318
    20 7cp5:P (1.76) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    21 7cp5:P (1.76) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 34274318
    22 7cp5:Q (1.76) BS01 DMU ? GO:0006123 ... P00423 34274318
    23 7cp5:S (1.76) BS01 ZN ? GO:0005740 ... P00428 34274318
    24 7cp5:W (1.76) BS01 DMU ? GO:0006123 ... P07470 34274318
    25 7cp5:Z (1.76) BS01 DMU ? GO:0006123 ... P10175 34274318
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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