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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6y57:LA (3.5) BS01 rna ? GO:0002181 ... P62917 32268098
    2 6y57:LA (3.5) BS02 rna ? GO:0002181 ... P62917 32268098
    3 6y57:LB (3.5) BS01 rna ? GO:0002181 ... P39023 32268098
    4 6y57:LC (3.5) BS01 rna ? GO:0002181 ... P36578 32268098
    5 6y57:LC (3.5) BS02 rna ? GO:0002181 ... P36578 32268098
    6 6y57:LD (3.5) BS01 rna ? GO:0000027 ... P46777 32268098
    7 6y57:LD (3.5) BS02 rna ? GO:0000027 ... P46777 32268098
    8 6y57:LE (3.5) BS01 rna ? GO:0000027 ... Q02878 32268098
    9 6y57:LF (3.5) BS01 rna ? GO:0000463 ... P18124 32268098
    10 6y57:LF (3.5) BS02 rna ? GO:0000463 ... P18124 32268098
    11 6y57:LG (3.5) BS01 rna ? GO:0000470 ... P62424 32268098
    12 6y57:LG (3.5) BS02 rna ? GO:0000470 ... P62424 32268098
    13 6y57:LH (3.5) BS01 rna ? GO:0002181 ... P32969 32268098
    14 6y57:LI (3.5) BS01 rna ? GO:0000027 ... Q96L21 32268098
    15 6y57:LI (3.5) BS02 rna ? GO:0000027 ... Q96L21 32268098
    16 6y57:LJ (3.5) BS01 rna ? GO:0000027 ... P62913 32268098
    17 6y57:LJ (3.5) BS02 rna ? GO:0000027 ... P62913 32268098
    18 6y57:LL (3.5) BS01 rna ? GO:0001824 ... P26373 32268098
    19 6y57:LL (3.5) BS02 rna ? GO:0001824 ... P26373 32268098
    20 6y57:LM (3.5) BS01 rna ? GO:0002181 ... P50914 32268098
    21 6y57:LN (3.5) BS01 rna ? GO:0002181 ... P61313 32268098
    22 6y57:LN (3.5) BS02 rna ? GO:0002181 ... P61313 32268098
    23 6y57:LO (3.5) BS01 rna ? GO:0002181 ... P40429 32268098
    24 6y57:LP (3.5) BS01 rna ? GO:0002181 ... P18621 32268098
    25 6y57:LP (3.5) BS02 rna ? GO:0002181 ... P18621 32268098
    26 6y57:LQ (3.5) BS01 rna ? GO:0002181 ... Q07020 32268098
    27 6y57:LR (3.5) BS01 rna ? GO:0002181 ... P84098 32268098
    28 6y57:LR (3.5) BS02 rna ? GO:0002181 ... P84098 32268098
    29 6y57:LS (3.5) BS01 rna ? GO:0002181 ... Q02543 32268098
    30 6y57:LS (3.5) BS02 rna ? GO:0002181 ... Q02543 32268098
    31 6y57:LT (3.5) BS01 rna ? GO:0002181 ... P46778 32268098
    32 6y57:LT (3.5) BS02 rna ? GO:0002181 ... P46778 32268098
    33 6y57:LU (3.5) BS01 rna ? GO:0002181 ... P35268 32268098
    34 6y57:LV (3.5) BS01 rna ? GO:0000122 ... P62829 32268098
    35 6y57:LV (3.5) BS02 rna ? GO:0000122 ... P62829 32268098
    36 6y57:LW (3.5) BS01 rna ? GO:0000027 ... P83731 32268098
    37 6y57:LW (3.5) BS02 rna ? GO:0000027 ... P83731 32268098
    38 6y57:LX (3.5) BS01 rna ? GO:0000027 ... P62750 32268098
    39 6y57:LX (3.5) BS02 rna ? GO:0000027 ... P62750 32268098
    40 6y57:LY (3.5) BS01 rna ? GO:0002181 ... P61254 32268098
    41 6y57:LY (3.5) BS02 rna ? GO:0002181 ... P61254 32268098
    42 6y57:LZ (3.5) BS01 rna ? GO:0002181 ... P61353 32268098
    43 6y57:La (3.5) BS01 rna ? GO:0002181 ... P46776 32268098
    44 6y57:Lb (3.5) BS01 rna ? GO:0002181 ... P47914 32268098
    45 6y57:Lc (3.5) BS01 rna ? GO:0002181 ... P62888 32268098
    46 6y57:Ld (3.5) BS01 rna ? GO:0002181 ... P62899 32268098
    47 6y57:Le (3.5) BS01 rna ? GO:0002181 ... P62910 32268098
    48 6y57:Lf (3.5) BS01 rna ? GO:0000049 ... P18077 32268098
    49 6y57:Lg (3.5) BS01 rna ? GO:0002181 ... P49207 32268098
    50 6y57:Lg (3.5) BS02 ZN ? GO:0002181 ... P49207 32268098
    51 6y57:Lh (3.5) BS01 rna ? GO:0000463 ... P42766 32268098
    52 6y57:Lh (3.5) BS02 rna ? GO:0000463 ... P42766 32268098
    53 6y57:Li (3.5) BS01 rna ? GO:0002181 ... Q9Y3U8 32268098
    54 6y57:Lj (3.5) BS01 rna ? GO:0002181 ... P61927 32268098
    55 6y57:Lj (3.5) BS02 rna ? GO:0002181 ... P61927 32268098
    56 6y57:Lj (3.5) BS03 ZN ? GO:0002181 ... P61927 32268098
    57 6y57:Lk (3.5) BS01 rna ? GO:0001501 ... P63173 32268098
    58 6y57:Ll (3.5) BS01 rna ? GO:0002181 ... P62891 32268098
    59 6y57:Ll (3.5) BS02 rna ? GO:0002181 ... P62891 32268098
    60 6y57:Lm (3.5) BS01 rna ? GO:0002181 ... P62987 32268098
    61 6y57:Lm (3.5) BS02 ZN ? GO:0002181 ... P62987 32268098
    62 6y57:Lo (3.5) BS01 rna ? GO:0002181 ... P83881 32268098
    63 6y57:Lo (3.5) BS02 rna ? GO:0002181 ... P83881 32268098
    64 6y57:Lp (3.5) BS01 rna ? GO:0002181 ... P61513 32268098
    65 6y57:Lp (3.5) BS02 ZN ? GO:0002181 ... P61513 32268098
    66 6y57:Lr (3.5) BS01 rna ? GO:0002181 ... P46779 32268098
    67 6y57:SA (3.5) BS01 rna ? GO:0000028 ... P08865 32268098
    68 6y57:SB (3.5) BS01 rna ? GO:0002181 ... P61247 32268098
    69 6y57:SC (3.5) BS01 rna ? GO:0002181 ... P15880 32268098
    70 6y57:SD (3.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32268098
    71 6y57:SE (3.5) BS01 rna ? GO:0002181 ... P62701 32268098
    72 6y57:SF (3.5) BS01 rna ? GO:0000028 ... P46782 32268098
    73 6y57:SG (3.5) BS01 rna ? GO:0000082 ... P62753 32268098
    74 6y57:SH (3.5) BS01 rna ? GO:0001843 ... P62081 32268098
    75 6y57:SI (3.5) BS01 rna ? GO:0000462 ... P62241 32268098
    76 6y57:SI (3.5) BS02 rna ? GO:0000462 ... P62241 32268098
    77 6y57:SJ (3.5) BS01 rna ? GO:0002181 ... P46781 32268098
    78 6y57:SK (3.5) BS01 rna ? GO:0002181 ... P46783 32268098
    79 6y57:SL (3.5) BS01 rna ? GO:0002181 ... P62280 32268098
    80 6y57:SN (3.5) BS01 rna ? GO:0002181 ... P62277 32268098
    81 6y57:SO (3.5) BS01 rna ? GO:0000028 ... P62263 32268098
    82 6y57:SP (3.5) BS01 rna ? GO:0000028 ... P62841 32268098
    83 6y57:SQ (3.5) BS01 rna ? GO:0000462 ... P62249 32268098
    84 6y57:SR (3.5) BS01 rna ? GO:0002181 ... P08708 32268098
    85 6y57:SS (3.5) BS01 rna ? GO:0002181 ... P62269 32268098
    86 6y57:ST (3.5) BS01 rna ? GO:0000028 ... P39019 32268098
    87 6y57:SU (3.5) BS01 rna ? GO:0002181 ... P60866 32268098
    88 6y57:SW (3.5) BS01 rna ? GO:0002181 ... P62244 32268098
    89 6y57:SX (3.5) BS01 rna ? GO:0002181 ... P62266 32268098
    90 6y57:SY (3.5) BS01 rna ? GO:0002181 ... P62847 32268098
    91 6y57:SZ (3.5) BS01 rna ? GO:0002181 ... P62851 32268098
    92 6y57:Sa (3.5) BS01 rna ? GO:0002181 ... P62854 32268098
    93 6y57:Sa (3.5) BS02 ZN ? GO:0002181 ... P62854 32268098
    94 6y57:Sb (3.5) BS01 rna ? GO:0000028 ... P42677 32268098
    95 6y57:Sc (3.5) BS01 rna ? GO:0000028 ... P62857 32268098
    96 6y57:Sd (3.5) BS01 rna ? GO:0002181 ... P62273 32268098
    97 6y57:Sd (3.5) BS02 ZN ? GO:0002181 ... P62273 32268098
    98 6y57:Se (3.5) BS01 rna ? GO:0003735 ... P62861 32268098
    99 6y57:Sf (3.5) BS01 rna ? GO:0002181 ... P25398 32268098
    100 6y57:Sg (3.5) BS01 rna ? GO:0001891 ... P63244 32268098
    101 6y57:sh (3.5) BS01 rna ? GO:0002181 ... P62979 32268098
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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