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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6gb2:B0 (3.2) BS01 rna ? GO:0003735 ... A0A4X1U0F6 30089917
    2 6gb2:B1 (3.2) BS01 rna ? GO:0003735 ... A0A286ZTW8 30089917
    3 6gb2:B2 (3.2) BS01 rna ? GO:0003735 ... F1SGC7 30089917
    4 6gb2:B3 (3.2) BS01 rna ? GO:0003735 ... A0A8D1MIP3 30089917
    5 6gb2:B4 (3.2) BS01 rna ? GO:0003735 ... A0A4X1ULI6 30089917
    6 6gb2:B5 (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    7 6gb2:B5 (3.2) BS02 ZN N/A GO:0003735 ... N/A 30089917
    8 6gb2:B6 (3.2) BS01 rna ? GO:0003735 ... A0A4X1TLP9 30089917
    9 6gb2:B7 (3.2) BS01 rna ? GO:0003735 ... A0A4X1UFR4 30089917
    10 6gb2:B8 (3.2) BS01 rna ? GO:0003735 ... F1SVC5 30089917
    11 6gb2:B9 (3.2) BS01 rna ? GO:0003735 ... A0A287A731 30089917
    12 6gb2:B9 (3.2) BS02 ZN ? GO:0003735 ... A0A287A731 30089917
    13 6gb2:BC (3.2) BS01 rna ? GO:0003743 ... P46199 30089917
    14 6gb2:BC (3.2) BS02 rna ? GO:0003743 ... P46199 30089917
    15 6gb2:BC (3.2) BS03 GSP ? GO:0003743 ... P46199 30089917
    16 6gb2:BC (3.2) BS04 MG ? GO:0003743 ... P46199 30089917
    17 6gb2:BC (3.2) BS05 FME ? GO:0003743 ... P46199 30089917
    18 6gb2:BD (3.2) BS01 rna ? GO:0003735 ... F1RRN2 30089917
    19 6gb2:BE (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    20 6gb2:BF (3.2) BS01 rna ? GO:0003735 ... A0A287B9C4 30089917
    21 6gb2:BI (3.2) BS01 rna ? GO:0003735 ... I3LR45 30089917
    22 6gb2:BJ (3.2) BS01 peptide ? GO:0005840 ... F1RWJ0 30089917
    23 6gb2:BJ (3.2) BS02 peptide ? GO:0005840 ... F1RWJ0 30089917
    24 6gb2:BJ (3.2) BS03 peptide ? GO:0005840 ... F1RWJ0 30089917
    25 6gb2:BJ (3.2) BS04 peptide ? GO:0005840 ... F1RWJ0 30089917
    26 6gb2:BJ (3.2) BS05 peptide ? GO:0005840 ... F1RWJ0 30089917
    27 6gb2:BJ (3.2) BS06 rna ? GO:0005840 ... F1RWJ0 30089917
    28 6gb2:BK (3.2) BS01 rna ? GO:0003735 ... F1RU54 30089917
    29 6gb2:BN (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    30 6gb2:BO (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    31 6gb2:BP (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    32 6gb2:BQ (3.2) BS01 rna ? GO:0003735 ... F1RI89 30089917
    33 6gb2:BR (3.2) BS01 rna ? GO:0003735 ... F1RMQ4 30089917
    34 6gb2:BS (3.2) BS01 rna ? GO:0003735 ... A0A286ZNK1 30089917
    35 6gb2:BS (3.2) BS02 rna ? GO:0003735 ... A0A286ZNK1 30089917
    36 6gb2:BT (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    37 6gb2:BU (3.2) BS01 rna ? GO:0003735 ... A0A286ZU56 30089917
    38 6gb2:BV (3.2) BS01 rna ? GO:0003723 ... F1RY70 30089917
    39 6gb2:BW (3.2) BS01 rna ? GO:0003735 ... A0A4X1TXR4 30089917
    40 6gb2:BX (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    41 6gb2:BY (3.2) BS01 rna ? GO:0003723 ... F1RHJ1 30089917
    42 6gb2:Ba (3.2) BS01 rna ? GO:0003735 ... A0A287BIV6 30089917
    43 6gb2:Bb (3.2) BS01 rna ? GO:0005739 ... F1RW03 30089917
    44 6gb2:Bb (3.2) BS02 rna ? GO:0005739 ... F1RW03 30089917
    45 6gb2:Bd (3.2) BS01 rna ? GO:0005739 ... A0A286ZP98 30089917
    46 6gb2:Be (3.2) BS01 rna ? GO:0003735 ... A0A8D1F1K9 30089917
    47 6gb2:Be (3.2) BS02 MG ? GO:0003735 ... A0A8D1F1K9 30089917
    48 6gb2:Bf (3.2) BS01 rna ? GO:0005739 ... A0A287BQA1 30089917
    49 6gb2:Bg (3.2) BS01 rna ? GO:0003735 ... F1S8U4 30089917
    50 6gb2:Bh (3.2) BS01 rna ? GO:0003723 ... F1SR64 30089917
    51 6gb2:Bi (3.2) BS01 rna ? GO:0005739 ... I3LGM5 30089917
    52 6gb2:Bj (3.2) BS01 rna ? GO:0003735 ... F1SRT0 30089917
    53 6gb2:Bk (3.2) BS01 rna ? GO:0005761 ... A0A480J9Z6 30089917
    54 6gb2:Bk (3.2) BS02 rna ? GO:0005761 ... A0A480J9Z6 30089917
    55 6gb2:Bl (3.2) BS01 rna ? GO:0003735 ... A0A0R4J8D6 30089917
    56 6gb2:Bn (3.2) BS01 rna ? GO:0003735 ... A0A8D1P1C8 30089917
    57 6gb2:Bo (3.2) BS01 rna ? GO:0003735 ... F1S9B7 30089917
    58 6gb2:Bp (3.2) BS01 rna N/A N/A N/A 30089917
    59 6gb2:Bq (3.2) BS01 rna ? N/A I3LN63 30089917
    60 6gb2:Bt (3.2) BS01 rna ? GO:0003735 ... A0A287BP93 30089917
    61 6gb2:Bt (3.2) BS02 MG ? GO:0003735 ... A0A287BP93 30089917
    62 6gb2:Bv (3.2) BS01 rna ? GO:0005634 ... A0A286ZXA6 30089917
    63 6gb2:Bw (3.2) BS01 rna N/A GO:0003735 ... N/A 30089917
    64 6gb2:Bx (3.2) BS01 rna ? GO:0003735 ... F1RRH6 30089917
    65 6gb2:Bx (3.2) BS02 ZN ? GO:0003735 ... F1RRH6 30089917
    66 6gb2:CL (3.2) BS01 peptide ? GO:0003735 ... A0A4X1U6S6 30089917
    67 6gb2:CL (3.2) BS02 peptide ? GO:0003735 ... A0A4X1U6S6 30089917
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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