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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xdx:A (1.99) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 29400318
    2 5xdx:A (1.99) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 29400318
    3 5xdx:A (1.99) BS03 CU 7.1.1.9 GO:0004129 ... P00396 29400318
    4 5xdx:A (1.99) BS04 MG 7.1.1.9 GO:0004129 ... P00396 29400318
    5 5xdx:B (1.99) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 29400318
    6 5xdx:B (1.99) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 29400318
    7 5xdx:C (1.99) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 29400318
    8 5xdx:F (1.99) BS01 ZN ? GO:0005740 ... P00428 29400318
    9 5xdx:J (1.99) BS01 DMU ? GO:0006123 ... P07470 29400318
    10 5xdx:M (1.99) BS01 DMU ? GO:0006123 ... P10175 29400318
    11 5xdx:N (1.99) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 29400318
    12 5xdx:N (1.99) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 29400318
    13 5xdx:N (1.99) BS03 CU 7.1.1.9 GO:0004129 ... P00396 29400318
    14 5xdx:N (1.99) BS04 MG 7.1.1.9 GO:0004129 ... P00396 29400318
    15 5xdx:O (1.99) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 29400318
    16 5xdx:O (1.99) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 29400318
    17 5xdx:P (1.99) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 29400318
    18 5xdx:S (1.99) BS01 ZN ? GO:0005740 ... P00428 29400318
    19 5xdx:W (1.99) BS01 DMU ? GO:0006123 ... P07470 29400318
    20 5xdx:Z (1.99) BS01 DMU ? GO:0006123 ... P10175 29400318
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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