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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1y4z:A (2.0) BS01 MD1 1.7.5.1 GO:0005515 ... P09152 15615728
    2 1y4z:A (2.0) BS02 MD1 1.7.5.1 GO:0005515 ... P09152 15615728
    3 1y4z:A (2.0) BS03 6MO 1.7.5.1 GO:0005515 ... P09152 15615728
    4 1y4z:A (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 15615728
    5 1y4z:B (2.0) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    6 1y4z:B (2.0) BS02 F3S 1.7.5.1 GO:0005515 ... P11349 15615728
    7 1y4z:B (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    8 1y4z:B (2.0) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15615728
    9 1y4z:B (2.0) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15615728
    10 1y4z:C (2.0) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    11 1y4z:C (2.0) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 15615728
    12 1y4z:C (2.0) BS03 PCI 1.7.5.1 GO:0005886 ... P11350 15615728 MOAD: Ki=57nM
    PDBbind: -logKd/Ki=7.24, Ki=57nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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