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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cgd:0 (1.98) BS01 rna ? GO:0000027 ... P0A7N9 37550453
    2 8cgd:1 (1.98) BS01 rna ? GO:0002181 ... P0A7P5 37550453
    3 8cgd:2 (1.98) BS01 rna ? GO:0002181 ... P0A7Q1 37550453
    4 8cgd:3 (1.98) BS01 rna ? GO:0002181 ... P0A7Q6 37550453
    5 8cgd:3 (1.98) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    6 8cgd:c (1.98) BS01 rna ? GO:0000027 ... P60422 37550453
    7 8cgd:d (1.98) BS01 rna ? GO:0000027 ... P60438 37550453
    8 8cgd:e (1.98) BS01 rna ? GO:0001070 ... P60723 37550453
    9 8cgd:f (1.98) BS01 rna ? GO:0000027 ... P62399 37550453
    10 8cgd:f (1.98) BS02 rna ? GO:0000027 ... P62399 37550453
    11 8cgd:g (1.98) BS01 rna ? GO:0000027 ... P0AG55 37550453
    12 8cgd:h (1.98) BS01 rna ? GO:0002181 ... P0A7R1 37550453
    13 8cgd:i (1.98) BS01 rna ? GO:0002181 ... P0AA10 37550453
    14 8cgd:j (1.98) BS01 rna ? GO:0002181 ... P0ADY3 37550453
    15 8cgd:k (1.98) BS01 rna ? GO:0002181 ... P02413 37550453
    16 8cgd:l (1.98) BS01 rna ? GO:0000027 ... P0ADY7 37550453
    17 8cgd:l (1.98) BS02 rna ? GO:0000027 ... P0ADY7 37550453
    18 8cgd:m (1.98) BS01 rna ? GO:0000027 ... P0AG44 37550453
    19 8cgd:n (1.98) BS01 rna ? GO:0002181 ... P0C018 37550453
    20 8cgd:n (1.98) BS02 rna ? GO:0002181 ... P0C018 37550453
    21 8cgd:o (1.98) BS01 rna ? GO:0000027 ... P0A7K6 37550453
    22 8cgd:p (1.98) BS01 rna ? GO:0000027 ... P0A7L3 37550453
    23 8cgd:q (1.98) BS01 rna ? GO:0002181 ... P0AG48 37550453
    24 8cgd:r (1.98) BS01 rna ? GO:0002181 ... P61175 37550453
    25 8cgd:s (1.98) BS01 rna ? GO:0000027 ... P0ADZ0 37550453
    26 8cgd:t (1.98) BS01 rna ? GO:0000027 ... P60624 37550453
    27 8cgd:u (1.98) BS01 rna ? GO:0000027 ... P68919 37550453
    28 8cgd:u (1.98) BS02 rna ? GO:0000027 ... P68919 37550453
    29 8cgd:v (1.98) BS01 rna ? GO:0000027 ... P0A7L8 37550453
    30 8cgd:v (1.98) BS02 rna ? GO:0000027 ... P0A7L8 37550453
    31 8cgd:w (1.98) BS01 rna ? GO:0000027 ... P0A7M2 37550453
    32 8cgd:x (1.98) BS01 rna ? GO:0000027 ... P0A7M6 37550453
    33 8cgd:y (1.98) BS01 rna ? GO:0000027 ... P0AG51 37550453
    34 8cgd:y (1.98) BS02 rna ? GO:0000027 ... P0AG51 37550453
    35 8cgd:z (1.98) BS01 rna ? GO:0000027 ... P0A7N4 37550453
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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