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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7sym:B (4.8) BS01 rna ? GO:0000028 ... G1TLT8 N/A
    2 7sym:C (4.8) BS01 rna ? GO:0003735 ... G1SS70 N/A
    3 7sym:D (4.8) BS01 rna ? GO:0003723 ... G1SV32 N/A
    4 7sym:E (4.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 N/A
    5 7sym:F (4.8) BS01 rna ? GO:0003723 ... G1TA47 N/A
    6 7sym:G (4.8) BS01 rna ? GO:0000028 ... G1TFM5 N/A
    7 7sym:H (4.8) BS01 rna ? GO:0003735 ... A0A5K1UJS7 N/A
    8 7sym:I (4.8) BS01 rna ? GO:0003735 ... G1SVB0 N/A
    9 7sym:J (4.8) BS01 rna ? GO:0000462 ... G1TJW1 N/A
    10 7sym:K (4.8) BS01 rna ? GO:0003723 ... B7NZS8 N/A
    11 7sym:L (4.8) BS01 rna ? GO:0003723 ... G1TPV3 N/A
    12 7sym:M (4.8) BS01 rna ? GO:0003735 ... G1TRM4 N/A
    13 7sym:N (4.8) BS01 rna ? GO:0003735 ... G1SFR8 N/A
    14 7sym:O (4.8) BS01 rna ? GO:0003735 ... G1SP51 N/A
    15 7sym:P (4.8) BS01 rna ? GO:0000028 ... G1T1F0 N/A
    16 7sym:Q (4.8) BS01 rna ? GO:0000028 ... G1U0Q2 N/A
    17 7sym:R (4.8) BS01 rna ? GO:0000462 ... G1SGX4 N/A
    18 7sym:S (4.8) BS01 rna ? GO:0003735 ... G1TU13 N/A
    19 7sym:T (4.8) BS01 rna ? GO:0003676 ... G1TPG3 N/A
    20 7sym:U (4.8) BS01 rna ? GO:0000028 ... G1TN62 N/A
    21 7sym:V (4.8) BS01 rna ? GO:0003723 ... G1SIZ2 N/A
    22 7sym:X (4.8) BS01 rna ? GO:0003735 ... G1TG89 N/A
    23 7sym:Y (4.8) BS01 rna ? GO:0003735 ... G1SZ47 N/A
    24 7sym:Z (4.8) BS01 rna ? GO:0003735 ... G1T3D8 N/A
    25 7sym:a (4.8) BS01 rna ? GO:0003735 ... G1TDB3 N/A
    26 7sym:b (4.8) BS01 rna ? GO:0003735 ... G1TFE8 N/A
    27 7sym:b (4.8) BS02 ZN ? GO:0003735 ... G1TFE8 N/A
    28 7sym:c (4.8) BS01 rna ? GO:0000028 ... G1TZ76 N/A
    29 7sym:c (4.8) BS02 rna ? GO:0000028 ... G1TZ76 N/A
    30 7sym:d (4.8) BS01 rna ? GO:0000028 ... G1TIB4 N/A
    31 7sym:e (4.8) BS01 rna ? GO:0003735 ... G1U7M4 N/A
    32 7sym:f (4.8) BS01 rna ? GO:0003735 ... G1T8A2 N/A
    33 7sym:g (4.8) BS01 rna ? GO:0003735 ... G1SK22 N/A
    34 7sym:h (4.8) BS01 rna ? GO:0001891 ... G1SJB4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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