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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rnr:A (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    2 7rnr:A (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    3 7rnr:A (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    4 7rnr:B (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    5 7rnr:B (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    6 7rnr:B (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    7 7rnr:E (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    8 7rnr:E (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    9 7rnr:E (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    10 7rnr:F (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    11 7rnr:F (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    12 7rnr:F (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    13 7rnr:I (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    14 7rnr:I (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    15 7rnr:I (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    16 7rnr:J (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    17 7rnr:J (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    18 7rnr:J (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    19 7rnr:M (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    20 7rnr:M (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    21 7rnr:M (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    22 7rnr:N (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    23 7rnr:N (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    24 7rnr:N (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    25 7rnr:Q (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    26 7rnr:Q (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    27 7rnr:Q (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    28 7rnr:R (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    29 7rnr:R (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    30 7rnr:R (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    31 7rnr:S (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    32 7rnr:S (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    33 7rnr:S (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    34 7rnr:T (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    35 7rnr:T (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    36 7rnr:T (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    37 7rnr:Y (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    38 7rnr:Y (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    39 7rnr:Y (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    40 7rnr:Z (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    41 7rnr:Z (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    42 7rnr:Z (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    43 7rnr:a (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    44 7rnr:a (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    45 7rnr:a (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    46 7rnr:b (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    47 7rnr:b (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    48 7rnr:b (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    49 7rnr:g (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    50 7rnr:g (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    51 7rnr:g (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    52 7rnr:h (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    53 7rnr:h (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    54 7rnr:h (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    55 7rnr:k (3.3) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    56 7rnr:k (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    57 7rnr:k (3.3) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    58 7rnr:l (3.3) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    59 7rnr:l (3.3) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    60 7rnr:l (3.3) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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