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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7o3c:C (3.3) BS01 HEM ? GO:0001666 ... P00158 34616041
    2 7o3c:C (3.3) BS02 HEM ? GO:0001666 ... P00158 34616041
    3 7o3c:D (3.3) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    4 7o3c:E (3.3) BS01 FES 7.1.1.8 GO:0008121 ... Q9CR68 34616041
    5 7o3c:N (3.3) BS01 HEM ? GO:0001666 ... P00158 34616041
    6 7o3c:N (3.3) BS02 HEM ? GO:0001666 ... P00158 34616041
    7 7o3c:O (3.3) BS01 HEC 7.1.1.8 GO:0009055 ... Q9D0M3 34616041
    8 7o3c:P (3.3) BS01 FES 7.1.1.8 GO:0008121 ... Q9CR68 34616041
    9 7o3c:a (3.3) BS01 CU 7.1.1.9 GO:0001666 ... P00397 34616041
    10 7o3c:a (3.3) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 34616041
    11 7o3c:a (3.3) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 34616041
    12 7o3c:b (3.3) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 34616041
    13 7o3c:b (3.3) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 34616041
    14 7o3c:f (3.3) BS01 ZN ? GO:0005740 ... P19536 34616041
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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