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BioLiP
Download all results in tab-seperated text for 89 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7b04:A (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    2 7b04:A (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    3 7b04:A (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    4 7b04:A (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    5 7b04:A (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    6 7b04:B (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    7 7b04:B (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    8 7b04:B (2.97) BS03 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    9 7b04:C (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    10 7b04:C (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    11 7b04:C (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    12 7b04:D (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    13 7b04:D (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    14 7b04:D (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    15 7b04:D (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    16 7b04:D (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    17 7b04:E (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    18 7b04:E (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    19 7b04:E (2.97) BS03 MO 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    20 7b04:E (2.97) BS04 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    21 7b04:F (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    22 7b04:F (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    23 7b04:F (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    24 7b04:G (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    25 7b04:G (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    26 7b04:G (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    27 7b04:G (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    28 7b04:G (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    29 7b04:H (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    30 7b04:H (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    31 7b04:H (2.97) BS03 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    32 7b04:I (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    33 7b04:I (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    34 7b04:I (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35 7b04:J (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    36 7b04:J (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    37 7b04:J (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    38 7b04:J (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    39 7b04:J (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    40 7b04:K (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    41 7b04:K (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    42 7b04:K (2.97) BS03 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    43 7b04:L (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    44 7b04:L (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    45 7b04:L (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    46 7b04:M (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    47 7b04:M (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    48 7b04:M (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    49 7b04:M (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    50 7b04:M (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    51 7b04:N (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    52 7b04:N (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    53 7b04:N (2.97) BS03 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    54 7b04:O (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    55 7b04:O (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    56 7b04:O (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    57 7b04:P (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    58 7b04:P (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    59 7b04:P (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    60 7b04:P (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    61 7b04:P (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    62 7b04:Q (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    63 7b04:Q (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    64 7b04:Q (2.97) BS03 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    65 7b04:R (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    66 7b04:R (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    67 7b04:R (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    68 7b04:S (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    69 7b04:S (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    70 7b04:S (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    71 7b04:S (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    72 7b04:S (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    73 7b04:T (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    74 7b04:T (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    75 7b04:T (2.97) BS03 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    76 7b04:U (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    77 7b04:U (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    78 7b04:U (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    79 7b04:V (2.97) BS01 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    80 7b04:V (2.97) BS02 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    81 7b04:V (2.97) BS03 SF4 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    82 7b04:V (2.97) BS04 F3S 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    83 7b04:V (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    84 7b04:W (2.97) BS01 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    85 7b04:W (2.97) BS02 MD1 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    86 7b04:W (2.97) BS03 SF4 1.7.99.4 GO:0016491 ... Q1PZD8 N/A
    87 7b04:X (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    88 7b04:X (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    89 7b04:X (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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