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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ap5:AAA (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    2 7ap5:AAA (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    3 7ap5:AAA (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    4 7ap5:BBB (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    5 7ap5:BBB (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    6 7ap5:BBB (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    7 7ap5:BBB (2.131) BS04 RWB N/A GO:0015979 ... N/A N/A
    8 7ap5:CCC (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    9 7ap5:CCC (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    10 7ap5:CCC (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    11 7ap5:CCC (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    12 7ap5:DDD (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    13 7ap5:DDD (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    14 7ap5:DDD (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    15 7ap5:EEE (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    16 7ap5:EEE (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    17 7ap5:EEE (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    18 7ap5:EEE (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    19 7ap5:FFF (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    20 7ap5:FFF (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    21 7ap5:FFF (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    22 7ap5:GGG (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    23 7ap5:GGG (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    24 7ap5:GGG (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    25 7ap5:GGG (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    26 7ap5:HHH (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    27 7ap5:HHH (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    28 7ap5:HHH (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    29 7ap5:III (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    30 7ap5:III (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    31 7ap5:III (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    32 7ap5:III (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    33 7ap5:JJJ (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    34 7ap5:JJJ (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    35 7ap5:JJJ (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    36 7ap5:KKK (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    37 7ap5:KKK (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    38 7ap5:KKK (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    39 7ap5:KKK (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    40 7ap5:LLL (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    41 7ap5:LLL (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    42 7ap5:LLL (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    43 7ap5:LLL (2.131) BS04 RWB N/A GO:0015979 ... N/A N/A
    44 7ap5:MMM (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    45 7ap5:MMM (2.131) BS02 RWB N/A GO:0015979 ... N/A N/A
    46 7ap5:MMM (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    47 7ap5:MMM (2.131) BS04 PEB N/A GO:0015979 ... N/A N/A
    48 7ap5:MMM (2.131) BS05 PEB N/A GO:0015979 ... N/A N/A
    49 7ap5:NNN (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    50 7ap5:NNN (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    51 7ap5:NNN (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    52 7ap5:OOO (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    53 7ap5:OOO (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    54 7ap5:PPP (2.131) BS01 PEB N/A GO:0015979 ... N/A N/A
    55 7ap5:PPP (2.131) BS02 PEB N/A GO:0015979 ... N/A N/A
    56 7ap5:PPP (2.131) BS03 PEB N/A GO:0015979 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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