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BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xu7:AA (4.9) BS01 rna ? GO:0003735 ... P38979 34283226
    2 6xu7:AB (4.9) BS01 rna ? GO:0003735 ... P55830 34283226
    3 6xu7:AC (4.9) BS01 rna ? GO:0003723 ... P31009 34283226
    4 6xu7:AD (4.9) BS01 rna ? GO:0000278 ... Q06559 34283226
    5 6xu7:AD (4.9) BS02 rna ? GO:0000278 ... Q06559 34283226
    6 6xu7:AE (4.9) BS01 rna ? GO:0002181 ... P41042 34283226
    7 6xu7:AF (4.9) BS01 rna ? GO:0003723 ... Q24186 34283226
    8 6xu7:AG (4.9) BS01 rna ? GO:0002181 ... P29327 34283226
    9 6xu7:AH (4.9) BS01 rna ? GO:0002181 ... Q9VA91 34283226
    10 6xu7:AI (4.9) BS01 rna ? GO:0000462 ... Q8MLY8 34283226
    11 6xu7:AI (4.9) BS02 rna ? GO:0000462 ... Q8MLY8 34283226
    12 6xu7:AJ (4.9) BS01 rna ? GO:0000228 ... P55935 34283226
    13 6xu7:AK (4.9) BS01 rna ? N/A Q9VWG3 34283226
    14 6xu7:AL (4.9) BS01 rna ? GO:0000228 ... Q0E9B6 34283226
    15 6xu7:AM (4.9) BS01 rna ? N/A P80455 34283226
    16 6xu7:AN (4.9) BS01 rna ? GO:0000228 ... Q03334 34283226
    17 6xu7:AN (4.9) BS02 rna ? GO:0000228 ... Q03334 34283226
    18 6xu7:AO (4.9) BS01 rna ? GO:0003735 ... C0HKA0 34283226
    19 6xu7:AP (4.9) BS01 rna ? GO:0003723 ... Q7JZW2 34283226
    20 6xu7:AQ (4.9) BS01 rna ? GO:0000462 ... Q9W237 34283226
    21 6xu7:AR (4.9) BS01 rna ? GO:0002181 ... P17704 34283226
    22 6xu7:AS (4.9) BS01 rna ? GO:0000228 ... P41094 34283226
    23 6xu7:AT (4.9) BS01 rna ? GO:0000028 ... P39018 34283226
    24 6xu7:AU (4.9) BS01 rna ? GO:0003723 ... P55828 34283226
    25 6xu7:AW (4.9) BS01 rna ? GO:0002181 ... P48149 34283226
    26 6xu7:AX (4.9) BS01 rna ? GO:0002181 ... Q8T3U2 34283226
    27 6xu7:AY (4.9) BS01 rna ? GO:0002181 ... Q9W229 34283226
    28 6xu7:AZ (4.9) BS01 rna ? N/A P48588 34283226
    29 6xu7:Aa (4.9) BS01 rna ? GO:0002181 ... P13008 34283226
    30 6xu7:Ab (4.9) BS01 rna ? GO:0000028 ... Q9VBU9 34283226
    31 6xu7:Ac (4.9) BS01 rna ? GO:0000028 ... Q9W334 34283226
    32 6xu7:Ad (4.9) BS01 rna ? GO:0002181 ... Q9VH69 34283226
    33 6xu7:Ae (4.9) BS01 rna ? GO:0003735 ... Q7JYY0 34283226
    34 6xu7:Af (4.9) BS01 rna ? GO:0003735 ... P15357 34283226
    35 6xu7:Ag (4.9) BS01 rna ? GO:0001933 ... O18640 34283226
    36 6xu7:CA (4.9) BS01 rna ? GO:0000228 ... Q9V3G1 34283226
    37 6xu7:CA (4.9) BS02 rna ? GO:0000228 ... Q9V3G1 34283226
    38 6xu7:CB (4.9) BS01 rna ? GO:0002181 ... O16797 34283226
    39 6xu7:CC (4.9) BS01 rna ? GO:0002181 ... P09180 34283226
    40 6xu7:CC (4.9) BS02 rna ? GO:0002181 ... P09180 34283226
    41 6xu7:CD (4.9) BS01 rna ? GO:0000027 ... Q9W5R8 34283226
    42 6xu7:CD (4.9) BS02 rna ? GO:0000027 ... Q9W5R8 34283226
    43 6xu7:CE (4.9) BS01 rna ? GO:0000027 ... Q9V9W2 34283226
    44 6xu7:CF (4.9) BS01 rna ? GO:0000463 ... P32100 34283226
    45 6xu7:CF (4.9) BS02 rna ? GO:0000463 ... P32100 34283226
    46 6xu7:CG (4.9) BS01 rna ? GO:0042254 ... P46223 34283226
    47 6xu7:CG (4.9) BS02 rna ? GO:0042254 ... P46223 34283226
    48 6xu7:CH (4.9) BS01 rna ? GO:0002181 ... P50882 34283226
    49 6xu7:CI (4.9) BS01 rna ? GO:0000027 ... O61231 34283226
    50 6xu7:CI (4.9) BS02 rna ? GO:0000027 ... O61231 34283226
    51 6xu7:CI (4.9) BS03 rna ? GO:0000027 ... O61231 34283226
    52 6xu7:CJ (4.9) BS01 rna ? GO:0000228 ... P46222 34283226
    53 6xu7:CJ (4.9) BS02 rna ? GO:0000228 ... P46222 34283226
    54 6xu7:CJ (4.9) BS03 rna ? GO:0000228 ... P46222 34283226
    55 6xu7:CL (4.9) BS01 rna ? GO:0002181 ... P41126 34283226
    56 6xu7:CL (4.9) BS02 rna ? GO:0002181 ... P41126 34283226
    57 6xu7:CM (4.9) BS01 rna ? GO:0002181 ... P55841 34283226
    58 6xu7:CN (4.9) BS01 rna ? GO:0002181 ... O17445 34283226
    59 6xu7:CN (4.9) BS02 rna ? GO:0002181 ... O17445 34283226
    60 6xu7:CO (4.9) BS01 rna ? GO:0002181 ... Q9VNE9 34283226
    61 6xu7:CP (4.9) BS01 rna ? GO:0002181 ... Q9W3W8 34283226
    62 6xu7:CP (4.9) BS02 rna ? GO:0002181 ... Q9W3W8 34283226
    63 6xu7:CQ (4.9) BS01 rna ? GO:0002181 ... Q9VS34 34283226
    64 6xu7:CR (4.9) BS01 rna ? GO:0002181 ... P36241 34283226
    65 6xu7:CR (4.9) BS02 rna ? GO:0002181 ... P36241 34283226
    66 6xu7:CS (4.9) BS01 rna ? GO:0002181 ... P41093 34283226
    67 6xu7:CS (4.9) BS02 rna ? GO:0002181 ... P41093 34283226
    68 6xu7:CT (4.9) BS01 rna ? GO:0002181 ... Q9V9M7 34283226
    69 6xu7:CT (4.9) BS02 rna ? GO:0002181 ... Q9V9M7 34283226
    70 6xu7:CU (4.9) BS01 rna ? GO:0003735 ... E2JE76 34283226
    71 6xu7:CV (4.9) BS01 rna ? GO:0002181 ... P48159 34283226
    72 6xu7:CV (4.9) BS02 rna ? GO:0002181 ... P48159 34283226
    73 6xu7:CW (4.9) BS01 rna ? N/A Q9VJY6 34283226
    74 6xu7:CX (4.9) BS01 rna ? GO:0003735 ... A1A6X4 34283226
    75 6xu7:CX (4.9) BS02 rna ? GO:0003735 ... A1A6X4 34283226
    76 6xu7:CX (4.9) BS03 rna ? GO:0003735 ... A1A6X4 34283226
    77 6xu7:CY (4.9) BS01 rna ? GO:0003723 ... Q9VVU2 34283226
    78 6xu7:CY (4.9) BS02 rna ? GO:0003723 ... Q9VVU2 34283226
    79 6xu7:CZ (4.9) BS01 rna ? GO:0002181 ... Q9VBN5 34283226
    80 6xu7:Ca (4.9) BS01 rna ? GO:0002181 ... P41092 34283226
    81 6xu7:Cb (4.9) BS01 rna ? GO:0002181 ... Q24154 34283226
    82 6xu7:Cc (4.9) BS01 rna ? GO:0002181 ... Q9VJ19 34283226
    83 6xu7:Cd (4.9) BS01 rna ? GO:0002181 ... Q9V597 34283226
    84 6xu7:Ce (4.9) BS01 rna ? GO:0000228 ... P04359 34283226
    85 6xu7:Cf (4.9) BS01 rna ? GO:0002181 ... Q9VNB9 34283226
    86 6xu7:Cg (4.9) BS01 rna ? GO:0003735 ... Q9VHE5 34283226
    87 6xu7:Ch (4.9) BS01 rna ? GO:0000463 ... Q9W499 34283226
    88 6xu7:Ch (4.9) BS02 rna ? GO:0000463 ... Q9W499 34283226
    89 6xu7:Ci (4.9) BS01 rna ? GO:0000228 ... P49630 34283226
    90 6xu7:Cj (4.9) BS01 rna ? GO:0002181 ... Q9W1U6 34283226
    91 6xu7:Cj (4.9) BS02 rna ? GO:0002181 ... Q9W1U6 34283226
    92 6xu7:Ck (4.9) BS01 rna ? GO:0002181 ... Q9W5N2 34283226
    93 6xu7:Cl (4.9) BS01 rna ? GO:0002181 ... O16130 34283226
    94 6xu7:Cl (4.9) BS02 rna ? GO:0002181 ... O16130 34283226
    95 6xu7:Cm (4.9) BS01 rna ? GO:0003735 ... P18101 34283226
    96 6xu7:Co (4.9) BS01 rna ? GO:0003735 ... C5WLN8 34283226
    97 6xu7:Cp (4.9) BS01 rna ? GO:0002181 ... Q9VMU4 34283226
    98 6xu7:Cr (4.9) BS01 rna ? GO:0002181 ... Q9VZS5 34283226
    99 6xu7:Cz (4.9) BS01 rna ? GO:0002181 ... Q9VTP4 34283226
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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